Technical Reports

View our archive of technical reports, from 1979 to the present.

Research Publications

2022

• Acker, M, S L Hogle, P M Berube, T Hackl, A Coe, R Stepanauskas, S W Chisholm, and D J Repeta. 2022. “Phosphonate Production by Marine Microbes: Exploring New Sources and Potential Function.” Proceedings of the National Academy of Sciences of the United States of America 119 (11). https://doi.org/10.1073/pnas.2113386119.
• Aeppli, C. 2022. “Recent Advance in Understanding Photooxidation of Hydrocarbons after Oil Spills.” Current Opinion in Chemical Engineering 36. https://doi.org/10.1016/j.coche.2021.100763.
• Aeppli, C, D A Mitchell, P Keyes, E C Beirne, K M McFarlin, A T Roman-Hubers, I Rusyn, et al. 2022. “Oil Irradiation Experiments Document Changes in Oil Properties, Molecular Composition, and Dispersant Effectiveness Associated with Oil Photo-Oxidation.” Environmental Science & Technology 56 (12): 7789–99. https://doi.org/10.1021/acs.est.1c06149.
• Amon, D J, S Gollner, T Morato, B N Orcutt, et al. 2022. “Assessment of Scientific Gaps Related to the Effective Environmental Management of Deep-Seabed Mining.” Marine Policy 138. https://doi.org/10.1016/j.marpol.2022.105006.
• Archer, S D, L C Lubelczyk, M Kunes, K McPhee, W Dawydiak, M Staiger, K M Posman, and N J Poulton. 2022. “Saturation Approach to Determine Grazing Mortality in Picoeukaryote and Synechococcus Populations.” Frontiers in Marine Science 9. https://doi.org/10.3389/fmars.2022.844620.
• Balch, W M, D T Drapeau, B C Bowler, N R Record, N R Bates, S Pinkham, R Garley, and C Mitchell. 2022. “Changing Hydrographic, Biogeochemical, and Acidification Properties in the Gulf of Maine as Measured by the Gulf of Maine North Atlantic Time Series, GNATS, Between 1998 and 2018.” Journal of Geophysical Research: Biogeosciences 127 (6). https://doi.org/10.1029/2022JG006790.
• Beam, J P, A B Michaud, D T Johnston, P R Girguis, and D Emerson. 2022. “Impacts of Bioturbation on Iron Biogeochemistry and Microbial Communities in Coastal Sediment Mesocosms under Varying Degrees of Hypoxia.” Estuarine, Coastal and Shelf Science 276. https://doi.org/10.1016/j.ecss.2022.108032.
• Benavent, N, A S Mahajan, Q Li, C A Cuevas, J Schmale, H Angot, T Jokinen, S Archer, K Posman, et al. 2022. “Substantial Contribution of Iodine to Arctic Ozone Destruction.” Nature Geoscience 15 (10): 770–73. https://doi.org/10.1038/s41561-022-01018-w.
• Bowers, R M, S Nayfach, F Schulz, S P Jungbluth, I A Ruhl, A Sheremet, J Lee, R Stepanauskas, et al. 2022. “Dissecting the Dominant Hot Spring Microbial Populations Based on Community-Wide Sampling at Single-Cell Genomic Resolution.” ISME Journal 16 (5): 1337–47. https://doi.org/10.1038/s41396-021-01178-4.
• Brandl, S J, J S Lefcheck, A E Bates, D B Rasher, and T Norin. 2022. “Can Metabolic Traits Explain Animal Community Assembly and Functioning?” Biological Reviews. https://doi.org/10.1111/brv.12892.
• Brazelton, W J, J M McGonigle, S Motamedi, H L Pendleton, K I Twing, B C Miller, W J Lowe, et al. 2022. “Metabolic Strategies Shared by Basement Residents of the Lost City Hydrothermal Field.” Applied and Environmental Microbiology 88 (17). https://doi.org/10.1128/aem.00929-22.
• Burns, J A, D F Gruber, J P Gaffney, J S Sparks, and M R Brugler. 2022. “Transcriptomics of a Greenlandic Snailfish Reveals Exceptionally High Expression of Antifreeze Protein Transcripts.” Evolutionary Bioinformatics 18. https://doi.org/10.1177/11769343221118347.
• Campbell, A D, T Fatoyinbo, S P Charles, C Mitchell, et al. 2022. “A Review of Carbon Monitoring in Wet Carbon Systems Using Remote Sensing.” Environmental Research Letters 17 (2). https://doi.org/10.1088/1748-9326/ac4d4d.
• Clayton, S, H Alexander, J R Graff, N J Poulton, L R Thompson, H Benway, E Boss, and A Martiny. 2022. “Bio-GO-SHIP: The Time Is Right to Establish Global Repeat Sections of Ocean Biology.” Frontiers in Marine Science 8. https://doi.org/10.3389/fmars.2021.767443.
• Collister, B L, R C Zimmerman, C I Sukenik, W M Balch, and V J Hill. 2022. “The Influence of Particle Concentration and Bulk Characteristics on Polarized Oceanographic Lidar Measurements.” Limnology and Oceanography 67 (6): 1374–87. https://doi.org/10.1002/lno.12088.
• D’Angelo, T, J Goordial, N J Poulton, L Seyler, J A Huber, R Stepanauskas, and B N Orcutt. 2022. “Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume.” Frontiers in Microbiology 12. https://doi.org/10.3389/fmicb.2021.738231.
• DiMento, B P, C L Tusei, and C Aeppli. 2022. “Photochemical Degradation of Short-Chain Chlorinated Paraffins in Aqueous Solution by Hydrated Electrons and Hydroxyl Radicals.” Chemosphere 303. https://doi.org/10.1016/j.chemosphere.2022.134732.
• Donham, E M, S L Hamilton, I Aiello, N N Price, and J E Smith. 2022. “Consequences of Warming and Acidification for the Temperate Articulated Coralline Alga, Calliarthron Tuberculosum (Florideophyceae, Rhodophyta).” Journal of Phycology. https://doi.org/10.1111/jpy.13272.
• Du, J, B A Haley, A C Mix, A N Abbott, J McManus, and D Vance. 2022. “Reactive-Transport Modeling of Neodymium and Its Radiogenic Isotope in Deep-Sea Sediments: The Roles of Authigenesis, Marine Silicate Weathering and Reverse Weathering.” Earth and Planetary Science Letters 596. https://doi.org/10.1016/j.epsl.2022.117792.
• Elmi, D, D R Webster, and D M Fields. 2022. “Copepod Interaction with Small-Scale, Dissipative Eddies in Turbulence: Comparison among Three Marine Species.” Limnology and Oceanography. https://doi.org/10.1002/lno.12169.
• French-McCay, D P, M Gloekler, R C Prince, L Zhao, C Aeppli, et al. 2022. “Comparison of Laboratory Protocols for Evaluating Oil Emulsification.” In 44th AMOP Technical Seminar on Environmental Contamination and Response, 654–710. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85134218424&partnerID=40&md5=7d1183eb4be07e591d09520edf5940ee.
• Genot, B, and J A Burns. 2022. “Transformation of the Symbiotic Alga Oophila Amblystomatis: A New Tool for Animal-Algae Symbiosis Studies.” Symbiosis 87 (2): 143–51. https://doi.org/10.1007/s13199-022-00861-0.
• Giersch, R M, S F M Hart, S G Reddy, M A Yonemitsu, M J Orellana Rosales, M Korn, B M Geleta, P D Countway, J A Fernández Robledo, and M J Metzger. 2022. “Survival and Detection of Bivalve Transmissible Neoplasia from the Soft-Shell Clam Mya Arenaria (MarBTN) in Seawater.” Pathogens 11 (3). https://doi.org/10.3390/pathogens11030283.
• Godrijan, J, D T Drapeau, and W M Balch. 2022. “Osmotrophy of Dissolved Organic Carbon by Coccolithophores in Darkness.” New Phytologist 233 (2): 781–94. https://doi.org/10.1111/nph.17819.
• Govindarajan, A F, L McCartin, A Adams, E Allan, A Belani, R Francolini, J Fujii, et al. 2022. “Improved Biodiversity Detection Using a Large-Volume Environmental DNA Sampler with in Situ Filtration and Implications for Marine EDNA Sampling Strategies.” Deep-Sea Research Part I: Oceanographic Research Papers 189. https://doi.org/10.1016/j.dsr.2022.103871.
• Gustafson, C D, K Key, M R Siegfried, J Paul Winberry, H A Fricker, R A Venturelli, and A B Michaud. 2022. “A Dynamic Saline Groundwater System Mapped beneath an Antarctic Ice Stream.” Science 376 (6593): 640–44. https://doi.org/10.1126/science.abm3301.
• Hudson, J M, A B Michaud, D Emerson, and Y.-P. Chin. 2022. “Spatial Distribution and Biogeochemistry of Redox Active Species in Arctic Sedimentary Porewaters and Seeps.” Environmental Science: Processes and Impacts 24 (3): 426–38. https://doi.org/10.1039/d1em00505g.
• Johnson, M D, N N Price, and J E Smith. 2022. “Calcification Accretion Units (CAUs): A Standardized Approach for Quantifying Recruitment and Calcium Carbonate Accretion in Marine Habitats.” Methods in Ecology and Evolution 13 (7): 1436–46. https://doi.org/10.1111/2041-210X.13867.
• Johnstone, J W, J J Lunden, R G Waller, N J Poulton, and H Togami. 2022. “Antarctic Deep-Sea Coral Larvae May Be Resistant to End-Century Ocean Warming.” Coral Reefs 41 (5): 1495–1510. https://doi.org/10.1007/s00338-022-02297-w.
• Kamalanathan, M, S Mapes, A Prouse, P Faulkner, N H Klobusnik, J Hillhouse, D Hala, and A Quigg. 2022. “Core Metabolism Plasticity in Phytoplankton: Response of Dunaliella Tertiolecta to Oil Exposure.” Journal of Phycology. https://doi.org/10.1111/jpy.13286.
• Katz, S D, H Chen, D M Fields, E C Beirne, P Keyes, G T Drozd, and C Aeppli. 2022. “Changes in Chemical Composition and Copepod Toxicity during Petroleum Photo-Oxidation.” Environmental Science and Technology 56 (9): 5552–62. https://doi.org/10.1021/acs.est.2c00251.
• Kauffman, K M, W K Chang, J M Brown, F A Hussain, J Yang, M F Polz, and L Kelly. 2022. “Resolving the Structure of Phage–Bacteria Interactions in the Context of Natural Diversity.” Nature Communications 13 (1). https://doi.org/10.1038/s41467-021-27583-z.
• Kildow, J T. 2022. “The Importance of Understanding the Ocean’s Economic Value for a Sustainable World.” Marine Technology Society Journal 56 (1): 8–11. https://doi.org/10.4031/MTSJ.56.1.9.
• Lang, J, B Genot, J Bigeard, and J Colcombet. 2022. “MPK3 and MPK6 Control Salicylic Acid Signaling by Up-Regulating NLR Receptors during Pattern- and Effector-Triggered Immunity.” Journal of Experimental Botany 73 (7): 2190–2205. https://doi.org/10.1093/jxb/erab544.
• Lewis, A S L, C R Rollinson, A J Allyn, J Ashander, S Brodie, C B Brookson, E Collins, N Record, et al. 2022. “The Power of Forecasts to Advance Ecological Theory.” Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13955.
• Li, W, X.-M. Liu, K Wang, J McManus, B A Haley, Y Takahashi, M Shakouri, and Y Hu. 2022. “Potassium Isotope Signatures in Modern Marine Sediments: Insights into Early Diagenesis.” Earth and Planetary Science Letters 599. https://doi.org/10.1016/j.epsl.2022.117849.
• Lomas, M W, N R Bates, R J Johnson, D K Steinberg, and T Tanioka. 2022. “Adaptive Carbon Export Response to Warming in the Sargasso Sea.” Nature Communications 13 (1). https://doi.org/10.1038/s41467-022-28842-3.
• Lyalina, S, R Stepanauskas, F Wu, S Sanjabi, and K S Pollard. 2022. “Single Cell Genome Sequencing of Laboratory Mouse Microbiota Improves Taxonomic and Functional Resolution of This Model Microbial Community.” PLoS ONE 17 (4 April). https://doi.org/10.1371/journal.pone.0261795.
• Martínez-Pérez, C, C Greening, S K Bay, R J Lappan, Z Zhao, R Stepanauskas, et al. 2022. “Phylogenetically and Functionally Diverse Microorganisms Reside under the Ross Ice Shelf.” Nature Communications 13 (1). https://doi.org/10.1038/s41467-021-27769-5.
• Martiny, A C, G I Hagstrom, T DeVries, R T Letscher, M W Lomas, et al. 2022. “Marine Phytoplankton Resilience May Moderate Oligotrophic Ecosystem Responses and Biogeochemical Feedbacks to Climate Change.” Limnology and Oceanography 67 (S1): S378–89. https://doi.org/10.1002/lno.12029.
• McClenachan, L, N R Record, and J Waller. 2022. “How Do Human Actions Affect Fisheries? Differences in Perceptions between Fishers and Scientists in the Maine Lobster Fishery.” Facets 7: 174–93. https://doi.org/10.1139/facets-2021-0030.
• Michaud, A B, and S Apollonio. 2022. “Overwinter Oxygen and Silicate Dynamics in a High Arctic Lake (Immerk Lake, Devon Island, Canada).” Inland Waters. https://doi.org/10.1080/20442041.2022.2063623.
• Neeley, A R, M W Lomas, A Mannino, C Thomas, and R Vandermeulen. 2022. “Impact of Growth Phase, Pigment Adaptation, and Climate Change Conditions on the Cellular Pigment and Carbon Content of Fifty-One Phytoplankton Isolates.” Journal of Phycology. https://doi.org/10.1111/jpy.13279.
• Parnell-Turner, R E, A R Briais, L J LeVay, Y Cui, A Di Chiara, J P Dodd, D E Eason, M Lindsay, et al. 2022. “Reykjanes Mantle Convection and Climate: Crustal Objectives.” International Ocean Discovery Program: Preliminary Reports 395. https://doi.org/10.14379/iodp.pr.395C.2022.
• Rahman, S, A M Shiller, R F Anderson, M A Charette, C T Hayes, M Gilbert, K R Grissom, B Twining, et al. 2022. “Dissolved and Particulate Barium Distributions Along the US GEOTRACES North Atlantic and East Pacific Zonal Transects (GA03 and GP16): Global Implications for the Marine Barium Cycle.” Global Biogeochemical Cycles 36 (6). https://doi.org/10.1029/2022GB007330.
• Record, N R, J Evanilla, K Kanwit, C Burnell, C Cartisano, B J Lewis, J MacLeod, B Tupper, S Archer, et al. 2022. “Benefits and Challenges of a Stakeholder-Driven Shellfish Toxicity Forecast in Coastal Maine.” Frontiers in Marine Science 9. https://doi.org/10.3389/fmars.2022.923738.
• Ricart, A M, D Krause-Jensen, K Hancke, N N Price, P Masqué, and C M Duarte. 2022. “Sinking Seaweed in the Deep Ocean for Carbon Neutrality Is Ahead of Science and beyond the Ethics.” Environmental Research Letters 17 (8). https://doi.org/10.1088/1748-9326/ac82ff.
• Ricart, A M, M Ward, T M Hill, E Sanford, K J Kroeker, Y Takeshita, S Merolla, et al. 2022. “Commentary: Overstated Potential for Seagrass Meadows to Mitigate Coastal Ocean Acidification.” Frontiers in Marine Science 9. https://doi.org/10.3389/fmars.2022.884857.
• Robinson, N A, D Robledo, L Sveen, R R Daniels, A Krasnov, A Coates, Y H Jin, D Fields, et al. 2022. “Applying Genetic Technologies to Combat Infectious Diseases in Aquaculture.” Reviews in Aquaculture. https://doi.org/10.1111/raq.12733.
• Sanmartí, N, Y Ontoria, A M Ricart, R Arthur, T Alcoverro, M Pérez, and J Romero. 2022. “Exploring Coexistence Mechanisms in a Three-Species Assemblage.” Marine Environmental Research 178. https://doi.org/10.1016/j.marenvres.2022.105647.
• SShupe, M D, M Rex, B Blomquist, P O G. Persson, J Schmale, T Uttal, D Althausen, S Archer, K Posman, et al. 2022. “Overview of the MOSAiC Expedition- Atmosphere.” Elementa 10 (1). https://doi.org/10.1525/elementa.2021.00060.
• Sofen, L E, O A Antipova, M J Ellwood, N E Gilbert, G R LeCleir, M C Lohan, C Mahaffey, B Twining, et al. 2022. “Trace Metal Contents of Autotrophic Flagellates from Contrasting Open-Ocean Ecosystems.” Limnology And Oceanography Letters 7 (4): 354–62. https://doi.org/10.1002/lol2.10258.
• Traganos, D, C B Lee, A Blume, D Poursanidis, H Čižmek, J Deter, V Mačić, A Ricart, et al. 2022. “Spatially Explicit Seagrass Extent Mapping Across the Entire Mediterranean.” Frontiers in Marine Science 9. https://doi.org/10.3389/fmars.2022.871799.
• Twining, B S, and S B Baines. 2022. “Luxury Iron Uptake and Storage in Pennate Diatoms from the Equatorial Pacific Ocean.” Metallomics : Integrated Biometal Science 14 (7). https://doi.org/10.1093/mtomcs/mfac035.
• Uenzelmann-Neben, G, S M Bohaty, L B Childress, J McManus, et al. 2022. “Agulhas Plateau Cretaceous Climate: Drilling the Agulhas Plateau and Transkei Basin to Reconstruct the Cretaceous–Paleogene Tectonic and Climatic Evolution of the Southern Ocean Basin.” International Ocean Discovery Program: Preliminary Reports 392. https://doi.org/10.14379/iodp.pr.392.2022.
• Westfield, I, J Gunnell, D B Rasher, B Williams, and J B Ries. 2022. “Cessation of Hardground Accretion by the Cold-Water Coralline Algae Clathromorphum Compactum and Clathromorphum Nereostratum Predicted Within Two Centuries.” Geochemistry, Geophysics, Geosystems 23 (5). https://doi.org/10.1029/2021GC009942.
• Wu, J, S W Rogers, R Schaummann, C Higgins, and N Price. 2022. “Bioextractive Aquaculture as an Alternative Nutrient Management Strategy for Water Resource Recovery Facilities.” Water Research 212. https://doi.org/10.1016/j.watres.2022.118092.
• Yang, H, B Genot, S Duhamel, R Kerney, and J A Burns. 2022. “Organismal and Cellular Interactions in Vertebrate-Alga Symbioses.” Biochemical Society Transactions 50 (1): 609–20. https://doi.org/10.1042/BST20210153.
• Yun, J.-H., S D Archer, and N N Price. 2022. “Valorization of Waste Materials from Seaweed Industry: An Industry Survey Based Biorefinery Approach.” Reviews in Aquaculture. https://doi.org/10.1111/raq.12748.

2021

• Aluru, N, D M Fields, S Shema, A B Skiftesvik, and H I Browman. 2021. “Gene Expression and Epigenetic Responses of the Marine Cladoceran, Evadne Nordmanni, and the Copepod, Acartia Clausi, to Elevated CO2.” Ecology and Evolution 11 (23): 16776–85. https://doi.org/10.1002/ece3.8309
• Aponte, A, Y Gyaltshen, J A Burns, A A Heiss, E Kim, and S D Warring. 2021. “The Bacterial Diversity Lurking in Protist Cell Cultures.” American Museum Novitates. Sackler Institute for Comparative Genomics, Division of Invertebrate Zoology, American Museum of Natural History. https://doi.org/10.1206/3975.1
• Becraft, E D, M C Y Lau Vetter, O K I Bezuidt, J M Brown, J M Labonté, K Kauneckaite-Griguole, R Salkauskaite, R Stepanauskas, et al. 2021. “Evolutionary Stasis of a Deep Subsurface Microbial Lineage.” ISME Journal. https://doi.org/10.1038/s41396-021-00965-3
• Bock, N A, S Charvet, J Burns, Y Gyaltshen, A Rozenberg, S Duhamel, and E Kim. 2021. “Experimental Identification and in Silico Prediction of Bacterivory in Green Algae.” ISME Journal. https://doi.org/10.1038/s41396-021-00899-w
• Bowers, R M, S Nayfach, F Schulz, S P Jungbluth, I A Ruhl, A Sheremet, J Lee, R Stepanauskas, et al. 2021. “Dissecting the Dominant Hot Spring Microbial Populations Based on Community-Wide Sampling at Single-Cell Genomic Resolution.” ISME Journal. https://doi.org/10.1038/s41396-021-01178-4
• Brandão, M C, F Benedetti, S Martini, Y D Soviadan, J.-O. Irisson, J.-B. Romagnan, A Elineau, N Poulton, et al. 2021a. “Author Correction: Macroscale Patterns of Oceanic Zooplankton Composition and Size Structure (Scientific Reports, (2021), 11, 1, (15714), 10.1038/S41598-021-94615-5).” Scientific Reports 11 (1). https://doi.org/10.1038/s41598-021-99772-1
  2021b. “Macroscale Patterns of Oceanic Zooplankton Composition and Size Structure.” Scientific Reports 11 (1). https://doi.org/10.1038/s41598-021-94615-5
• Chen, L, S H Little, K Kreissig, S Severmann, and J McManus. 2021. “Isotopically Light Cd in Sediments Underlying Oxygen Deficient Zones.” Frontiers in Earth Science 9. https://doi.org/10.3389/feart.2021.623720
• Donham, E M, S L Hamilton, N N Price, S Kram, E Kelly, M D Johnson, A T Neu, and J Smith. 2021. “Experimental Assessment of the Impacts of Ocean Acidification and Urchin Grazing on Benthic Kelp Forest Assemblages.” Journal of Experimental Marine Biology and Ecology 540. https://doi.org/10.1016/j.jembe.2021.151548
• Elmi, D, D R Webster, and D M Fields. 2021. “Response of the Copepod Acartia Tonsa to the Hydrodynamic Cues of Small-Scale, Dissipative Eddies in Turbulence.” The Journal of Experimental Biology 224. https://doi.org/10.1242/jeb.237297
• Fones, E M, D R Colman, E A Kraus, R Stepanauskas, A S Templeton, J R Spear, and E S Boyd. 2021. “Diversification of Methanogens into Hyperalkaline Serpentinizing Environments through Adaptations to Minimize Oxidant Limitation.” ISME Journal 15 (4): 1121–35. https://doi.org/10.1038/s41396-020-00838-1
• Galbraith, D, J Loureiro, I Antoniadi, J Bainard, P Bureš, P Cápal, M Castro, N Poulton, et al. 2021. “Best Practices in Plant Cytometry.” Cytometry Part A 99 (4): 311–17. https://doi.org/10.1002/cyto.a.24295
• Garcia-Heredia, I, A S Bhattacharjee, O Fornas, M L Gomez, J M Martínez, and M Martinez-Garcia. 2021. “Benchmarking of Single-Virus Genomics: A New Tool for Uncovering the Virosphere.” Environmental Microbiology 23 (3): 1584–93. https://doi.org/10.1111/1462-2920.15375
• Ghodhbane-Gtari, F, T D’Angelo, A Gueddou, S Ghazouani, M Gtari, and L S Tisa. 2021. “Alone Yet Not Alone: Frankia Lives Under the Same Roof With Other Bacteria in Actinorhizal Nodules.” Frontiers in Microbiology 12. https://doi.org/10.3389/fmicb.2021.749760
• Glass, J B, P Ranjan, C B Kretz, B L Nunn, A M Johnson, M Xu, J McManus, and F J Stewart. 2021. “Microbial Metabolism and Adaptations in Atribacteria-Dominated Methane Hydrate Sediments.” Environmental Microbiology 23 (8): 4646–60. https://doi.org/10.1111/1462-2920.15656
• Goñi, M A, L W Juranek, R E Sipler, and K A Welch. 2021. “Particulate Organic Matter Distributions in the Water Column of the Chukchi Sea During Late Summer.” Journal of Geophysical Research: Oceans 126 (9). https://doi.org/10.1029/2021JC017664
• Goordial, J, T D’angelo, J M Labonté, N J Poulton, J M Brown, R Stepanauskas, G L Früh-Green, and B N Orcutt. 2021. “Microbial Diversity and Function in Shallow Subsurface Sediment and Oceanic Lithosphere of the Atlantis Massif.” MBio 12 (4). https://doi.org/10.1128/mBio.00490-21
• Gosselin, K M, R K Nelson, A C Spivak, S P Sylva, B A S Van Mooy, C Aeppli, C M Sharpless, et al. 2021. “Production of Two Highly Abundant 2-Methyl-Branched Fatty Acids by Blooms of the Globally Significant Marine CyanobacteriaTrichodesmium Erythraeum.” ACS Omega 6 (35): 22803–10. https://doi.org/10.1021/acsomega.1c03196
• Hendrickson, R, C Urbaniak, J J Minich, H S Aronson, C Martino, R Stepanauskas, R Knight, and K Venkateswaran. 2021. “Clean Room Microbiome Complexity Impacts Planetary Protection Bioburden.” Microbiome 9 (1). https://doi.org/10.1186/s40168-021-01159-x
• Herbert, L C, Q Zhu, A B Michaud, K Laufer-Meiser, C K Jones, N Riedinger, Z S Stooksbury, R C Aller, B B Jørgensen, and L M Wehrmann. 2021. “Benthic Iron Flux Influenced by Climate-Sensitive Interplay between Organic Carbon Availability and Sedimentation Rate in Arctic Fjords.” Limnology and Oceanography. https://doi.org/10.1002/lno.11885
• Hoffert, M, R E Anderson, J Reveillaud, L G Murphy, R Stepanauskas, and J A Huber. 2021. “Genomic Variation Influences Methanothermococcus Fitness in Marine Hydrothermal Systems.” Frontiers in Microbiology 12. https://doi.org/10.3389/fmicb.2021.714920
• Huber, J A, and B N Orcutt. 2021. “COBRA: A Research Accelerator for the Crustal Ocean Biosphere.” Marine Technology Society Journal 55 (3): 130–31. https://doi.org/10.4031/MTSJ.55.3.14
• Jabre, L J, A E Allen, S J P McCain, J P McCrow, N Tenenbaum, J L Spackeen, R E Sipler, D Bronk, et al. 2021. “Molecular Underpinnings and Biogeochemical Consequences of Enhanced Diatom Growth in a Warming Southern Ocean.” Proceedings of the National Academy of Sciences of the United States of America 118 (30). https://doi.org/10.1073/pnas.2107238118
• Jackson, R L, A J Gabric, P A Matrai, M T Woodhouse, R Cropp, G B Jones, E S M Deschaseaux, et al. 2021. “Parameterizing the Impact of Seawater Temperature and Irradiance on Dimethylsulfide (DMS) in the Great Barrier Reef and the Contribution of Coral Reefs to the Global Sulfur Cycle.” Journal of Geophysical Research: Oceans 126 (3). https://doi.org/10.1029/2020JC016783
• Janssen, D J, J Rickli, A N Abbott, M J Ellwood, B S Twining, D C Ohnemus, P Nasemann, D Gilliard, and S L Jaccard. 2021. “Release from Biogenic Particles, Benthic Fluxes, and Deep Water Circulation Control Cr and Δ53Cr Distributions in the Ocean Interior.” Earth and Planetary Science Letters 574. https://doi.org/10.1016/j.epsl.2021.117163
• Jimenez, V, J A Burns, F Le Gall, F Not, and D Vaulot. 2021. “No Evidence of Phago-Mixotropy in Micromonas Polaris (Mamiellophyceae), the Dominant Picophytoplankton Species in the Arctic.” Journal of Phycology 57 (2): 435–46. https://doi.org/10.1111/jpy.13125
• Jørgensen, B B, K Laufer, A B Michaud, and L M Wehrmann. 2021. “Biogeochemistry and Microbiology of High Arctic Marine Sediment Ecosystems—Case Study of Svalbard Fjords.” Limnology and Oceanography 66 (S1): S273–92. https://doi.org/10.1002/lno.11551
• Khawar, M I, and D Nabi. 2021. “Relook on the Linear Free Energy Relationships Describing the Partitioning Behavior of Diverse Chemicals for Polyethylene Water Passive Samplers.” ACS Omega. https://doi.org/10.1021/acsomega.0c05179
• Killberg-Thoreson, L, S E Baer, R E Sipler, W G Reay, Q N Roberts, and D A Bronk. 2021. “Seasonal Nitrogen Uptake Dynamics and Harmful Algal Blooms in the York River, Virginia.” Estuaries and Coasts 44 (3): 750–68. https://doi.org/10.1007/s12237-020-00802-4
• Kim, W E, K Charov, M Džunková, E D Becraft, J Brown, F Schulz, T Woyke, J J La Clair, R Stepanauskas, and M D Burkart. 2021. “Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics.” ACS Chemical Biology 16 (5): 813–19. https://doi.org/10.1021/acschembio.1c00157
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• Kranzler, C F, M A Brzezinski, N R Cohen, R H Lampe, M Maniscalco, C P Till, J Mack, J R Latham, K W Bruland, B Twining, et al. 2021. “Impaired Viral Infection and Reduced Mortality of Diatoms in Iron-Limited Oceanic Regions.” Nature Geoscience. https://doi.org/10.1038/s41561-021-00711-6
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• Meyer-Gutbrod, E, F Muller-Karger, S Craig, B Orcutt, M Behl, E Bhatt, D Crout, et al. 2021. “Tos Expands Efforts to Promote Justice, Equity, Diversity, and Inclusion in the Ocean Sciences.” Oceanography 34 (1): 9. https://doi.org/10.5670/oceanog.2021.109
• Mordy, C W, L Eisner, K Kearney, D Kimmel, M W Lomas, K Mier, P Proctor, P H Ressler, P Stabeno, and E Wisegarver. 2021. “Spatiotemporal Variability of the Nitrogen Deficit in Bottom Waters on the Eastern Bering Sea Shelf.” Continental Shelf Research 224. https://doi.org/10.1016/j.csr.2021.104423
• Murphy, C L, A Sheremet, P F Dunfield, J R Spear, R Stepanauskas, T Woyke, M S Elshahed, and N H Youssef. 2021. “Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities.” MBio 12 (3). https://doi.org/10.1128/mBio.00985-21
• Murray, A E, J Freudenstein, S Gribaldo, R Hatzenpichler, P Hugenholtz, P Kämpfer, K T Konstantinidis, D Emerson, et al. 2021. “Author Correction: Roadmap for Naming Uncultivated Archaea and Bacteria (Nature Microbiology, (2020), 5, 8, (987-994), 10.1038/S41564-020-0733-X).” Nature Microbiology 6 (1): 136. https://doi.org/10.1038/s41564-020-00827-2
• Nayfach, S, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, R Stepanauskas, et al. 2021a. “A Genomic Catalog of Earth’s Microbiomes.” Nature Biotechnology 39 (4): 499–509. https://doi.org/10.1038/s41587-020-0718-6
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• Niemisto, M, D M Fields, K F Clark, J D Waller, S J Greenwood, and R A Wahle. 2021. “American Lobster Postlarvae Alter Gene Regulation in Response to Ocean Warming and Acidification.” Ecology and Evolution 11 (2): 806–19. https://doi.org/10.1002/ece3.7083
• Orcutt, B N, T D’Angelo, C G Wheat, and E Trembath-Reichert. 2021. “Microbe-Mineral Biogeography from Multi-Year Incubations in Oceanic Crust at North Pond, Mid-Atlantic Ridge.” Environmental Microbiology 23 (7): 3923–36. https://doi.org/10.1111/1462-2920.15366
• Orellana, M V, D A Hansell, P A Matrai, and C Leck. 2021. “Marine Polymer-Gels’ Relevance in the Atmosphere as Aerosols and Ccn.” Gels 7 (4). https://doi.org/10.3390/gels7040185
• Pershing, A J, M A Alexander, D C Brady, D Brickman, E N Curchitser, A W Diamond, L McClenachan, N Record, et al. 2021. “Climate Impacts on the Gulf of Maine Ecosystem: A Review of Observed and Expected Changes in 2050 from Rising Temperatures.” Elementa 9 (1). https://doi.org/10.1525/elementa.2020.00076
• Priscu, J C, J Kalin, J Winans, T Campbell, M R Siegfried, M Skidmore, J E Dore, J McManis, A Michaud, et al. 2021. “Scientific Access into Mercer Subglacial Lake: Scientific Objectives, Drilling Operations and Initial Observations.” Annals of Glaciology. https://doi.org/10.1017/aog.2021.10
• Record, N R. 2021. “The Intertwined Futures of Whales and Humans.” Oceanography 34 (3): 16–18. https://doi.org/10.5670/oceanog.2021.314
• Record, N R, P D Countway, K Kanwit, and J A Fernández-Robledo. 2021. “Rise of the Rare Biosphere: Thinking beyond Climate Envelopes for Forecasting Harmful Algal Blooms.” Elementa 9 (1). https://doi.org/10.1525/elementa.2020.00056
• Ricart, A M, M Ward, T M Hill, E Sanford, K J Kroeker, Y Takeshita, S Merolla, et al. 2021. “Coast-Wide Evidence of Low PH Amelioration by Seagrass Ecosystems.” Global Change Biology. https://doi.org/10.1111/gcb.15594
• Ross, C H, D E Pendleton, B Tupper, D Brickman, M A Zani, C A Mayo, and N R Record. 2021. “Projecting Regions of North Atlantic Right Whale, Eubalaena Glacialis, Habitat Suitability in the Gulf of Maine for the Year 2050.” Elementa 9 (1). https://doi.org/10.1525/elementa.2020.20.00058
• Royo-Llonch, M, P Sánchez, C Ruiz-González, G Salazar, C Pedrós-Alió, M Sebastián, K Labadie, N Poulton, et al. 2021. “Compendium of 530 Metagenome-Assembled Bacterial and Archaeal Genomes from the Polar Arctic Ocean.” Nature Microbiology 6 (12): 1561–74. https://doi.org/10.1038/s41564-021-00979-9
• Sánchez-García, L, D Carrizo, M A Lezcano, M Moreno-Paz, C Aeppli, M García-Villadangos, O Prieto-Ballesteros, C Demergasso, G Chong, and V Parro. 2021. “Time-Integrative Multibiomarker Detection in Triassic-Jurassic Rocks from the Atacama Desert: Relevance to the Search for Basic Life beyond Earth.” Astrobiology 21 (11): 1421–37. https://doi.org/10.1089/ast.2020.2339
• Shaked, Y, B S Twining, A Tagliabue, and M T Maldonado. 2021. “Probing the Bioavailability of Dissolved Iron to Marine Eukaryotic Phytoplankton Using In Situ Single Cell Iron Quotas.” Global Biogeochemical Cycles 35 (8). https://doi.org/10.1029/2021GB006979
• Sleith, R S, and K G Karol. 2021. “Global High-Throughput Genotyping of Organellar Genomes Reveals Insights into the Origin and Spread of Invasive Starry Stonewort (Nitellopsis Obtusa).” Biological Invasions 23 (11): 3471–82. https://doi.org/10.1007/s10530-021-02591-8
• Suter, E A, M G Pachiadaki, E Montes, V P Edgcomb, M I Scranton, C D Taylor, and G T Taylor. 2021. “Diverse Nitrogen Cycling Pathways across a Marine Oxygen Gradient Indicate Nitrogen Loss Coupled to Chemoautotrophic Activity.” Environmental Microbiology 23 (6): 2747–64. https://doi.org/10.1111/1462-2920.15187
• Tanioka, T, K Matsumoto, and M W Lomas. 2021. “Drawdown of Atmospheric PCO2 Via Variable Particle Flux Stoichiometry in the Ocean Twilight Zone.” Geophysical Research Letters 48 (22). https://doi.org/10.1029/2021GL094924
• T Thorson, J T, M L Arimitsu, L A K Barnett, W Cheng, L B Eisner, A C Haynie, A J Hermann, K Holsman, D Kimmel, M Lomas, J Richar, and E Siddon. 2021. “Forecasting Community Reassembly Using Climate-Linked Spatio-Temporal Ecosystem Models.” Ecography 44 (4): 612–25. https://doi.org/10.1111/ecog.05471
• Twining, B S, O Antipova, P D Chappell, N R Cohen, J E Jacquot, E L Mann, A Marchetti, D C Ohnemus, S Rauschenberg, and A Tagliabue. 2021. “Taxonomic and Nutrient Controls on Phytoplankton Iron Quotas in the Ocean.” Limnology And Oceanography Letters 6 (2): 96–106. https://doi.org/10.1002/lol2.10179
• Ulloa, O, C Henríquez-Castillo, S Ramírez-Flandes, A M Plominsky, A A Murillo, C Morgan-Lang, S J Hallam, and R Stepanauskas. 2021. “The Cyanobacterium Prochlorococcus Has Divergent Light-Harvesting Antennae and May Have Evolved in a Low-Oxygen Ocean.” Proceedings of the National Academy of Sciences of the United States of America 118 (11). https://doi.org/10.1073/PNAS.2025638118
• Vernet, M, I Ellingsen, C Marchese, S Bélanger, M Cape, D Slagstad, and P A Matrai. 2021. “Spatial Variability in Rates of Net Primary Production (NPP) and Onset of the Spring Bloom in Greenland Shelf Waters.” Progress in Oceanography 198. https://doi.org/10.1016/j.pocean.2021.102655
• Ward, M A, T M Hill, C Souza, T Filipczyk, A M Ricart, S Merolla, L R Capece, et al. 2021. “Blue Carbon Stocks and Exchanges along the California Coast.” Biogeosciences 18 (16): 4717–32. https://doi.org/10.5194/bg-18-4717-2021
• Wear, E K, M J Church, B N Orcutt, C N Shulse, M V Lindh, and C R Smith. 2021. “Bacterial and Archaeal Communities in Polymetallic Nodules, Sediments, and Bottom Waters of the Abyssal Clarion-Clipperton Zone: Emerging Patterns and Future Monitoring Considerations.” Frontiers in Marine Science 8. https://doi.org/10.3389/fmars.2021.634803
• Williams, B, P T W Chan, I T Westfield, D B Rasher, and J Ries. 2021. “Ocean Acidification Reduces Skeletal Density of Hardground-Forming High-Latitude Crustose Coralline Algae.” Geophysical Research Letters 48 (5). https://doi.org/10.1029/2020GL091499
• Yadavalli, R, K Umeda, H A Waugh, A N Tracy, A V Sidhu, D E Hernández, and J A Fernández Robledo. 2021. “CRISPR/Cas9 Ribonucleoprotein-Based Genome Editing Methodology in the Marine Protozoan Parasite Perkinsus Marinus.” Frontiers in Bioengineering and Biotechnology 9. https://doi.org/10.3389/fbioe.2021.623278
• Yakubovskaya, E, T Zaliznyak, J M Martínez, and G T Taylor. 2021. “Raman Microspectroscopy Goes Viral: Infection Dynamics in the Cosmopolitan Microalga, Emiliania Huxleyi.” Frontiers in Microbiology 12. https://doi.org/10.3389/fmicb.2021.686287

2020

• Ardyna, M, C J Mundy, N Mayot, L C Matthes, L Oziel, C Horvat, E Leusadasd, P Assmy, V Hill, P Matrai, et al. 2020. “Under-Ice Phytoplankton Blooms: Shedding Light on the ‘Invisible’ Part of Arctic Primary Production.” Frontiers in Marine Science 7. https://doi.org/10.3389/fmars.2020.608032.
• Barco, R A, G M Garrity, J J Scott, J P Amend, K H Nealson, and D Emerson. 2020. “A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.” MBio 11 (1). https://doi.org/10.1128/MBIO.02475-19.
• Beam, J P, E D Becraft, J M Brown, F Schulz, J K Jarett, O Bezuidt, N J Poulton, K Clak, P F Dunfield, N Ravin, J R Spear, B P Hedlund, K A Kormas, S M Sievert, M S Elshahed, H A Barton, M B Stott, J A Eison, D P Moser, T C Onstott, T Woyke, and R Stepanauskas. 2020. “Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN.” Frontiers in Microbiology 11. https://doi.org/10.3389/fmicb.2020.01848.
• Beam, J P, S George, N R Record, P D Countway, D T Johnston, P R Girguis, and D Emerson. 2020. “Mud, Microbes, and Macrofauna: Seasonal Dynamics of the Iron Biogeochemical Cycle in an Intertidal Mudflat.” Frontiers in Marine Science 7. https://doi.org/10.3389/fmars.2020.562617.
• Brown, J M, J M Labonté, J Brown, N R Record, N J Poulton, M E Sieracki, R Logares, and R Stepanauskas. 2020. “Single Cell Genomics Reveals Viruses Consumed by Marine Protists.” Frontiers in Microbiology 11. https://doi.org/10.3389/fmicb.2020.524828.
• Bundy, R M, A Tagliabue, N J Hawco, P L Morton, B S Twining, M Hatta, A E Noble, et al. 2020. “Elevated Sources of Cobalt in the Arctic Ocean.” Biogeosciences 17 (19): 4745–67. https://doi.org/10.5194/bg-17-4745-2020.
• Chen, M L, E D Becraft, M Pachiadaki, J M Brown, J K Jarett, J M Gasol, N V Ravin, D P Moser, T Nunoura, G J Herndl, T Woyke, and R Stepanauskas. 2020. “Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f.” Frontiers in Microbiology 11. https://doi.org/10.3389/fmicb.2020.00376.
• Collister, B L, R C Zimmerman, V J Hill, C I Sukenik, and W M Balch. 2020. “Polarized Lidar and Ocean Particles: Insights from a Mesoscale Coccolithophore Bloom.” Applied Optics 59 (15): 4650–62. https://doi.org/10.1364/AO.389845.
• Cotti-Rausch, B E, M W Lomas, E M Lachenmyer, E G Baumann, and T L Richardson. 2020. “Size-Fractionated Biomass and Primary Productivity of Sargasso Sea Phytoplankton.” Deep-Sea Research Part I: Oceanographic Research Papers 156. https://doi.org/10.1016/j.dsr.2019.103141.
• D’Alelio, D, S Rampone, L M Cusano, V Morfino, L Russo, N Sanseverino, J E Cloern, and M W Lomas. 2020. “Machine Learning Identifies a Strong Association between Warming and Reduced Primary Productivity in an Oligotrophic Ocean Gyre.” Scientific Reports 10 (1). https://doi.org/10.1038/s41598-020-59989-y.
• Deeds, J R, W L Stutts, M D Celiz, J MacLeod, A E Hamilton, B J Lewis, D W Miller, K Kanwit, L J Smith, K M Kulis, P McCarron, C D Rauschenberg, C A Burnell, S D Archer, et al. 2020. “Dihydrodinophysistoxin-1 Produced by Dinophysis Norvegica in the Gulf of Maine, USA and Its Accumulation in Shellfish.” Toxins 12 (9). https://doi.org/10.3390/toxins12090533.
• E. Hopkins, F, P D. Nightingale, J A. Stephens, C Mark Moore, S Richier, G L. Cripps, and S D. Archer. 2020. “A Meta-Analysis of Microcosm Experiments Shows That Dimethyl Sulfide (DMS) Production in Polar Waters Is Insensitive to Ocean Acidification.” Biogeosciences 17 (1): 163–86. https://doi.org/10.5194/bg-17-163-2020.
• Faktorová, D, R E R Nisbet, J A Fernández Robledo, E Casacuberta, L Sudek, A E Allen, M Ares Jr., et al. 2020a. “Genetic Tool Development in Marine Protists: Emerging Model Organisms for Experimental Cell Biology.” Nature Methods 17 (5): 481–94. https://doi.org/10.1038/s41592-020-0796-x.
• Faktorová, D, R E R Nisbet, J A Fernández Robledo, E Casacuberta, L Sudek, A E Allen, M Ares Jr, et al. 2020b. “Publisher Correction: Genetic Tool Development in Marine Protists: Emerging Model Organisms for Experimental Cell Biology (Nature Methods, (2020), 17, 5, (481-494), 10.1038/S41592-020-0796-X).” Nature Methods 17 (5): 551. https://doi.org/10.1038/s41592-020-0828-6.
• Fones, E M, D R Colman, E A Kraus, R Stepanauskas, A S Templeton, J R Spear, and E S Boyd. 2020. “Diversification of Methanogens into Hyperalkaline Serpentinizing Environments through Adaptations to Minimize Oxidant Limitation.” ISME Journal. https://doi.org/10.1038/s41396-020-00838-1.
• Garcia, C A, G I Hagstrom, A A Larkin, L J Ustick, S A Levin, M W Lomas, and A C Martiny. 2020. “Linking Regional Shifts in Microbial Genome Adaptation with Surface Ocean Biogeochemistry.” Philosophical Transactions of the Royal Society B: Biological Sciences 375 (1798). https://doi.org/10.1098/rstb.2019.0254.
• Godrijan, J, D Drapeau, and W M Balch. 2020. “Mixotrophic Uptake of Organic Compounds by Coccolithophores.” Limnology and Oceanography 65 (6): 1410–21. https://doi.org/10.1002/lno.11396.
• González-Rivero, M, O Beijbom, A Rodriguez-Ramirez, D E P Bryant, A Ganase, Y Gonzalez-Marrero, A Herrera-Reveles, E V Kennedy, C J S Kim, S Lopez-Marcano, K Markey, B P Neal, et al. 2020. “Monitoring of Coral Reefs Using Artificial Intelligence: A Feasible and Cost-Effective Approach.” Remote Sensing 12 (3). https://doi.org/10.3390/rs12030489.
• Grasso, I, D Russell, A Matthews, J Matthews, and N R Record. 2020. “Applying Algorithmic Accountability Frameworks with Domain-Specific Codes of Ethics: A Case Study in Ecosystem Forecasting for Shellfish Toxicity in the Gulf of Maine.” In , 83–91. Clarkson University, Potsdam, United States: Association for Computing Machinery, Inc. https://doi.org/10.1145/3412815.3416897.
• Hallmann, C, B J Nettersheim, J J Brocks, A Schwelm, J M Hope, F Not, M Lomas, et al. 2020. “Reply to: Sources of C30 Steroid Biomarkers in Neoproterozoic–Cambrian Rocks and Oils.” Nature Ecology and Evolution 4 (1): 37–39. https://doi.org/10.1038/s41559-019-1049-1.
• Hedayatkhah, A, M S Cretoiu, G Emtiazi, L J Stal, and H Bolhuis. 2020. “Corrigendum to ‘Bioremediation of Chromium Contaminated Water by Diatoms with Concomitant Lipid Accumulation for Biofuel Production’ [J. Environ. Manag. 227 (2018) 313–320](S0301479718310028)(10.1016/j.Jenvman.2018.09.011).” Journal of Environmental Management 260. https://doi.org/10.1016/j.jenvman.2020.110099.
• Hopkins, F E, P Suntharalingam, M Gehlen, O Andrews, S D Archer, L Bopp, E Buitenhuis, et al. 2020. “The Impacts of Ocean Acidification on Marine Trace Gases and the Implications for Atmospheric Chemistry and Climate.” Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 476 (2237). https://doi.org/10.1098/rspa.2019.0769.
• Jarett, J K, M Džunková, F Schulz, S Roux, D Paez-Espino, E Eloe-Fadrosh, S P Jungbluth, N Ivanova, J R Spear, S A Carr, C B Trivedi, F A Corsetti, H A Johnson, E Becraft, N Kyrpides, R Stepanauskas, and T Woyke. 2020. “Insights into the Dynamics between Viruses and Their Hosts in a Hot Spring Microbial Mat.” ISME Journal 14 (10): 2527–41. https://doi.org/10.1038/s41396-020-0705-4.
• Jensen, L T, P Morton, B S Twining, M I Heller, M Hatta, C I Measures, S John, et al. 2020. “A Comparison of Marine Fe and Mn Cycling: U.S. GEOTRACES GN01 Western Arctic Case Study.” Geochimica et Cosmochimica Acta 288: 138–60. https://doi.org/10.1016/j.gca.2020.08.006.
• Jørgensen, B B, K Laufer, A B Michaud, and L M Wehrmann. 2020. “Biogeochemistry and Microbiology of High Arctic Marine Sediment Ecosystems—Case Study of Svalbard Fjords.” Limnology and Oceanography. https://doi.org/10.1002/lno.11551.
• Kellogg, M M, M R McIlvin, J Vedamati, B S Twining, J W Moffett, A Marchetti, D M Moran, and M A Saito. 2020. “Efficient Zinc/Cobalt Inter-Replacement in Northeast Pacific Diatoms and Relationship to High Surface Dissolved Co : Zn Ratios.” Limnology and Oceanography 65 (11): 2557–82. https://doi.org/10.1002/lno.11471.
• Kienteca Lange, P, P J Werdell, Z K Erickson, G Dall’Olmo, R J W Brewin, M V Zubkov, G A Tarran, H A Bouman, W H Slae, S E Craig, N J Poulton, A Bracher, M W Lomas, and I Cetinić. 2020. “Radiometric Approach for the Detection of Picophytoplankton Assemblages across Oceanic Fronts.” Optics Express 28 (18): 25682–705. https://doi.org/10.1364/OE.398127.
• Killberg-Thoreson, L, S E Baer, R E Sipler, W G Reay, Q N Roberts, and D A Bronk. 2020. “Seasonal Nitrogen Uptake Dynamics and Harmful Algal Blooms in the York River, Virginia.” Estuaries and Coasts. https://doi.org/10.1007/s12237-020-00802-4.
• Krause, J W, and M W Lomas. 2020. “Understanding Diatoms’ Past and Future Biogeochemical Role in High-Latitude Seas.” Geophysical Research Letters 47 (1). https://doi.org/10.1029/2019GL085602.
• Lapham, L L, S R Dallimore, C Magen, L C Henderson, L C Powers, M Gonsior, B Clark, M Côté, P Fraser, and B N Orcutt. 2020. “Microbial Greenhouse Gas Dynamics Associated With Warming Coastal Permafrost, Western Canadian Arctic.” Frontiers in Earth Science 8. https://doi.org/10.3389/feart.2020.582103.
• Larkin, A A, C A Garcia, K A Ingoglia, N S Garcia, S E Baer, B S Twining, M W Lomas, and A C Martiny. 2020. “Subtle Biogeochemical Regimes in the Indian Ocean Revealed by Spatial and Diel Frequency of Prochlorococcus Haplotypes.” Limnology and Oceanography 65 (S1): S220–32. https://doi.org/10.1002/lno.11251.
• Laufer, K, A B Michaud, H Røy, and B B Jørgensen. 2020. “Reactivity of Iron Minerals in the Seabed Toward Microbial Reduction–A Comparison of Different Extraction Techniques.” Geomicrobiology Journal 37 (2): 170–89. https://doi.org/10.1080/01490451.2019.1679291.
• Lebrato, M, D Garbe-Schönberg, M N Müller, S Blanco-Ameijeiras, R A Feely, L Lorenzoni, J.-C. Molinero, B Twinning, et al. 2020. “Global Variability in Seawater Mg:Ca and Sr:Ca Ratios in the Modern Ocean.” Proceedings of the National Academy of Sciences of the United States of America 117 (36): 22281–92. https://doi.org/10.1073/pnas.1918943117.
• Little, S H, C Archer, J McManus, J Najorka, A V Wegorzewski, and D Vance. 2020. “Towards Balancing the Oceanic Ni Budget.” Earth and Planetary Science Letters 547. https://doi.org/10.1016/j.epsl.2020.116461.
• Lomas, M W, L B Eisner, J Gann, S E Baer, C W Mordy, and P J Stabeno. 2020. “Time-Series of Direct Primary Production and Phytoplankton Biomass in the Southeastern Bering Sea: Responses to Cold and Warm Stanzas.” Marine Ecology Progress Series 642: 39–54. https://doi.org/10.3354/meps13317.
• Luo, H, B B Tolar, B K Swan, C L Zhang, R Stepanauskas, M A Moran, and J T Hollibaugh. 2020. “Correction: Single-Cell Genomics Shedding Light on Marine Thaumarchaeota Diversification (The ISME Journal, (2014), 8, 3, (732-736), 10.1038/Ismej.2013.202).” ISME Journal 14 (3): 880. https://doi.org/10.1038/s41396-019-0558-x.
• Maggiori, C, J Stromberg, Y Blanco, J Goordial, E Cloutis, M García-Villadangos, V Parro, and L Whyte. 2020. “The Limits, Capabilities, and Potential for Life Detection with MinION Sequencing in a Paleochannel Mars Analog.” Astrobiology 20 (3): 375–93. https://doi.org/10.1089/ast.2018.1964.
• Maps, F, and N R Record. 2020. “Marine Ecosystems Model Development Should Be Rooted in Past Experiences, Not Anchored in Old Habits.” ICES Journal of Marine Science 77 (1): 46–57. https://doi.org/10.1093/icesjms/fsz218.
• Marquis, N D, T J Bishop, N R Record, P D Countway, and J A Fernández Robledo. 2020. “A QPCR-Based Survey of Haplosporidium Nelsoni and Perkinsus Spp. In the Eastern Oyster, Crassostrea Virginica in Maine, USA.” Pathogens 9 (4). https://doi.org/10.3390/pathogens9040256.
• Martínez Martínez, J, F Martinez-Hernandez, and M Martinez-Garcia. 2020. “Single-Virus Genomics and Beyond.” Nature Reviews Microbiology. https://doi.org/10.1038/s41579-020-00444-0.
• Martiny, A C, L Ustick, C A. Garcia, and M W Lomas. 2020. “Genomic Adaptation of Marine Phytoplankton Populations Regulates Phosphate Uptake.” Limnology and Oceanography 65 (S1): S340–50. https://doi.org/10.1002/lno.11252.
• Mayot, N, P A Matrai, A Arjona, S Bélanger, C Marchese, T Jaegler, M Ardyna, and M Steele. 2020. “Springtime Export of Arctic Sea Ice Influences Phytoplankton Production in the Greenland Sea.” Journal of Geophysical Research: Oceans 125 (3). https://doi.org/10.1029/2019JC015799.
• Michaud, A B, T J Vick-Majors, A M Achberger, M L Skidmore, B C Christner, M Tranter, and J C Priscu. 2020. “Environmentally Clean Access to Antarctic Subglacial Aquatic Environments.” Antarctic Science 32 (5): 329–40. https://doi.org/10.1017/S0954102020000231.
• Motamedi, S, B N Orcutt, G L Früh-Green, K I Twing, H L Pendleton, and W J Brazelton. 2020. “Microbial Residents of the Atlantis Massif’s Shallow Serpentinite Subsurface.” Applied and Environmental Microbiology 86 (11). https://doi.org/10.1128/AEM.00356-20.
• Murray, A E, J Freudenstein, S Gribaldo, R Hatzenpichler, P Hugenholtz, P Kämpfer, K T Konstantinidis, D Emerson, et al. 2020. “Roadmap for Naming Uncultivated Archaea and Bacteria.” Nature Microbiology 5 (8): 987–94. https://doi.org/10.1038/s41564-020-0733-x.
• Nayfach, S, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, R Stepanauska, et al. 2020a. “A Genomic Catalog of Earth’s Microbiomes.” Nature Biotechnology. https://doi.org/10.1038/s41587-020-0718-6.
• ———. 2020b. “Publisher Correction: A Genomic Catalog of Earth’s Microbiomes (Nature Biotechnology, (2020), 10.1038/S41587-020-0718-6).” Nature Biotechnology. https://doi.org/10.1038/s41587-020-00769-4.
• Neal, B P, B Honisch, T Warrender, G J Williams, T M Work, and N N Price. 2020. “Possible Control of Acute Outbreaks of a Marine Fungal Pathogen by Nominally Herbivorous Tropical Reef Fish.” Oecologia 193 (3): 603–17. https://doi.org/10.1007/s00442-020-04697-7.
• Niemisto, M, D M Fields, K F Clark, J D Waller, S J Greenwood, and R A Wahle. 2020. “American Lobster Postlarvae Alter Gene Regulation in Response to Ocean Warming and Acidification.” Ecology and Evolution. https://doi.org/10.1002/ece3.7083.
• Orcutt, B N, J A Bradley, W J Brazelton, E R Estes, J M Goordial, J A Huber, R M Jones, et al. 2020. “Impacts of Deep-Sea Mining on Microbial Ecosystem Services.” Limnology and Oceanography 65 (7): 1489–1510. https://doi.org/10.1002/lno.11403.
• Orcutt, B N, T D’Angelo, C G Wheat, and E Trembath-Reichert. 2020. “Microbe-Mineral Biogeography from Multi-Year Incubations in Oceanic Crust at North Pond, Mid-Atlantic Ridge.” Environmental Microbiology. https://doi.org/10.1111/1462-2920.15366.
• Pimiento, C, F Leprieur, D Silvestro, J S Lefcheck, C Albouy, D B Rasher, M Davis, J.-C. Svenning, and J N Griffin. 2020. “Functional Diversity of Marine Megafauna in the Anthropocene.” Science Advances 6 (16). https://doi.org/10.1126/sciadv.aay7650.
• Prejato, M Lo, D McKee, and C Mitchell. 2020. “Inherent Optical Properties-Reflectance Relationships Revisited.” Journal of Geophysical Research: Oceans 125 (11). https://doi.org/10.1029/2020JC016661.
• Rasher, D B, R S Steneck, J Halfar, K J Kroeker, J B Ries, M T Tinker, P T W Chan, et al. 2020. “Keystone Predators Govern the Pathway and Pace of Climate Impacts in a Subarctic Marine Ecosystem.” Science 369 (6509): 1351–55. https://doi.org/10.1126/SCIENCE.AAV7515.
• Record, N R, and A Pershing. 2020. “A Note on the Effects of Epidemic Forecasts on Epidemic Dynamics.” PeerJ 8. https://doi.org/10.7717/peerj.9649.
• Rodriguez-Ramirez, A, M González-Rivero, O Beijbom, C Bailhache, P Bongaerts, K T Brown, D E P Bryant, et al. 2020. “A Contemporary Baseline Record of the World’s Coral Reefs.” Scientific Data 7 (1). https://doi.org/10.1038/s41597-020-00698-6.
• Rogener, M K, R E Sipler, K S Hunter, D A Bronk, and S B Joye. 2020. “Pelagic Methane Oxidation in the Northern Chukchi Sea.” Limnology and Oceanography 65 (1): 96–110. https://doi.org/10.1002/lno.11254.
• Sam-Yellowe, T Y, K Addepalli, R Yadavalli, and J W Peterson. 2020. “New Trichrome Stains Identify Cysts of Colpodella Sp. (Apicomplexa) and Bodo Caudatus.” International Microbiology 23 (2): 303–11. https://doi.org/10.1007/s10123-019-00104-1.
• Saw, J H W, T Nunoura, M Hirai, Y Takaki, R Parsons, M Michelsen, K Longnecker, E B Kujawinski, R Stepanauskas, et al. 2020. “Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria.” MBio 11 (1). https://doi.org/10.1128/mBio.02975-19.
• Scott, J J, T C Adam, A Duran, D E Burkepile, and D B Rasher. 2020. “Intestinal Microbes: An Axis of Functional Diversity among Large Marine Consumers.” Proceedings of the Royal Society B: Biological Sciences 287 (1924). https://doi.org/10.1098/rspb.2019.2367.
• Steneck, R S, S N Arnold, R Boenish, R de León, P J Mumby, D B Rasher, and M W Wilson. 2020. “Response: Commentary: Managing Recovery Resilience in Coral Reefs Against Climate-Induced Bleaching and Hurricanes: A 15 Year Case Study From Bonaire, Dutch Caribbean.” Frontiers in Marine Science 7. https://doi.org/10.3389/fmars.2020.579060.
• Sunagawa, S, S G Acinas, P Bork, C Bowler, S G Acinas, M Babin, P Bork, N Poulton, M Sieracki, et al. 2020. “Tara Oceans: Towards Global Ocean Ecosystems Biology.” Nature Reviews Microbiology 18 (8): 428–45. https://doi.org/10.1038/s41579-020-0364-5.
• Suter, E A, M G Pachiadaki, E Montes, V P Edgcomb, M I Scranton, C D Taylor, and G T Taylor. 2020. “Diverse Nitrogen Cycling Pathways across a Marine Oxygen Gradient Indicate Nitrogen Loss Coupled to Chemoautotrophic Activity.” Environmental Microbiology. https://doi.org/10.1111/1462-2920.15187.
• Tessler, M, M R Brugler, J A Burns, N R Sinatra, D M Vogt, A Varma, M Xiao, R J Wood, and D F Gruber. 2020. “Ultra-Gentle Soft Robotic Fingers Induce Minimal Transcriptomic Response in a Fragile Marine Animal.” Current Biology 30 (4): R157–58. https://doi.org/10.1016/j.cub.2020.01.032.
• Thomas, H J D, A D Bjorkman, I H Myers-Smith, S C Elmendorf, J Kattge, S Diaz, M Vellend, K Guay, et al. 2020. “Global Plant Trait Relationships Extend to the Climatic Extremes of the Tundra Biome.” Nature Communications 11 (1). https://doi.org/10.1038/s41467-020-15014-4.
• Tracy, A N, R Yadavalli, K S Reed, R Parnaik, N J Poulton, D Bishop-Bailey, and J A Fernández Robledo. 2020. “Genome to Phenome Tools: In Vivo and in Vitro Transfection of Crassostrea Virginica Hemocytes.” Fish and Shellfish Immunology 103: 438–41. https://doi.org/10.1016/j.fsi.2020.05.022.
• Tyrell, A S, N S Fisher, and D M Fields. 2020. “Separating Thermal and Viscous Effects of Temperature on Copepod Respiration and Energy Budget.” Biological Bulletin 239 (1): 62–71. https://doi.org/10.1086/709646.
• Vick-Majors, T J, A B Michaud, M L Skidmore, C Turetta, C Barbante, B C Christner, J E Dore, et al. 2020. “Biogeochemical Connectivity Between Freshwater Ecosystems beneath the West Antarctic Ice Sheet and the Sub-Ice Marine Environment.” Global Biogeochemical Cycles 34 (3): no. https://doi.org/10.1029/2019GB006446.
• Vijn, S, D P Compart, N Dutta, A Foukis, M Hess, A N Hristov, K F Kalscheur, N N Price, et al. 2020. “Key Considerations for the Use of Seaweed to Reduce Enteric Methane Emissions From Cattle.” Frontiers in Veterinary Science 7. https://doi.org/10.3389/fvets.2020.597430.
• Wassmann, P, E C Carmack, B A Bluhm, C M Duarte, J Berge, K Brown, J M Grebmeier, P Matrai, et al. 2020. “Towards a Unifying Pan-Arctic Perspective: A Conceptual Modelling Toolkit.” Progress in Oceanography 189. https://doi.org/10.1016/j.pocean.2020.102455.
• Wheat, C G, K Becker, H Villinger, B N Orcutt, T Fournier, A Hartwell, and C Paul. 2020. “Subseafloor Cross-Hole Tracer Experiment Reveals Hydrologic Properties, Heterogeneities, and Reactions in Slow-Spreading Oceanic Crust.” Geochemistry, Geophysics, Geosystems 21 (1). https://doi.org/10.1029/2019GC008804.
• Woods, M N, T J Hong, D Baughman, G Andrews, D M Fields, and P A Matrai. 2020. “Accumulation and Effects of Microplastic Fibers in American Lobster Larvae (Homarus Americanus).” Marine Pollution Bulletin 157. https://doi.org/10.1016/j.marpolbul.2020.111280.
• Yadavalli, R, K Umeda, and J A Fernández Robledo. 2020. “Perkinsus Marinus.” Trends in Parasitology 36 (12): 1013–14. https://doi.org/10.1016/j.pt.2020.05.002.

2019

• Aeppli, C, S Katz, H Chen, and E Beirne. 2019. "Formation, Detection, and Fate of Oil Photo-Products Formed after Marine Oil Spills." In Proceedings - 42nd AMOP Technical Seminar on Environmental Contamination and Response, 825–33. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85070955471&partnerID=40&md5=a368e9331e0b7fba774a7c890738d2dc.
• Archer, S D, K M Posman, J DeStefano, A O Harrison, A Ladina, E A Cheff, and D P Witt. 2019. "Fluorescent Detection of Bromoperoxidase Activity in Microalgae and Planktonic Microbial Communities Using Aminophenyl Fluorescein." Frontiers in Marine Science 6 (FEB). https://doi.org/10.3389/fmars.2019.00068.
• Baer, S E, S Rauschenberg, C A Garcia, N S Garcia, A C Martiny, B S Twining, and M W Lomas. 2019. "Carbon and Nitrogen Productivity during Spring in the Oligotrophic Indian Ocean along the GO-SHIP IO9N Transect." Deep-Sea Research Part II: Topical Studies in Oceanography 161: 81–91. https://doi.org/10.1016/j.dsr2.2018.11.008.
• Balch, W M, B C Bowler, D T Drapeau, L C Lubelczyk, E Lyczkowski, C Mitchell, and A Wyeth. 2019. "Coccolithophore Distributions of the North and South Atlantic Ocean." Deep-Sea Research Part I: Oceanographic Research Papers 151. https://doi.org/10.1016/j.dsr.2019.06.012.
• Bayer, S R, P D Countway,and R A Wahle. 2019. "Developing an EDNA Toolkit to Quantify Broadcast Spawning Events of the Sea Scallop Placopecten Magellanicus: Moving beyond Fertilization Assays." Marine Ecology Progress Series 621: 127–41. https://doi.org/10.3354/meps12991.
• Benites, L F, N Poulton, K Labadie, M E Sieracki, N Grimsley, and G Piganeau. 2019. “Single Cell Ecogenomics Reveals Mating Types of Individual Cells and SsDNA Viral Infections in the Smallest Photosynthetic Eukaryotes.” Philosophical Transactions of the Royal Society B: Biological Sciences 374 (1786). https://doi.org/10.1098/rstb.2019.0089.
• Berelson, W M, J McManus, S Severmann, and N Rollins. 2019. "Benthic Fluxes from Hypoxia-Influenced Gulf of Mexico Sediments: Impact on Bottom Water Acidification." Marine Chemistry 209: 94–106. https://doi.org/10.1016/j.marchem.2019.01.004.
• Berube, P M, A Rasmussen, R Braakman, R Stepanauskas, and S W Chisholm. 2019. "Emergence of Trait Variability through the Lens of Nitrogen Assimilation in Prochlorococcus." ELife 8. https://doi.org/10.7554/eLife.41043.
• Bostic, J T, C Aeppli, R F Swarthout, C M Reddy, and L A Ziolkowski. 2019. "Erratum: Ongoing Biodegradation of Deepwater Horizon Oil in Beach Sands: Insights from Tracing Petroleum Carbon into Microbial Biomass (Marine Pollution Bulletin (2018) 126 (130–136), (S0025326X17309050) (10.1016/j.Marpolbul.2017.10.058))." Marine Pollution Bulletin 141: 611. https://doi.org/10.1016/j.marpolbul.2019.03.015.
• Brandl, S J, D B Rasher, I M Côté, J M Casey, E S Darling, J S Lefcheck, and J E Duffy. 2019. "Coral Reef Ecosystem Functioning: Eight Core Processes and the Role of Biodiversity." Frontiers in Ecology and the Environment. https://doi.org/10.1002/fee.2088.
• Brun, P, K Stamieszkin, A W Visser, P Licandro, M R Payne, and T Kiørboe. 2019. "Climate Change Has Altered Zooplankton-Fuelled Carbon Export in the North Atlantic." Nature Ecology and Evolution 3 (3): 416–23. https://doi.org/10.1038/s41559-018-0780-3.
• Cammen, K M, D B Rasher, and R S Steneck. 2019. "Predator Recovery, Shifting Baselines, and the Adaptive Management Challenges They Create." Ecosphere 10 (2). https://doi.org/10.1002/ecs2.2579.
• Cardoso, D C, M S Cretoiu, L J Stal, and H Bolhuis. 2019. "Seasonal Development of a Coastal Microbial Mat." Scientific Reports 9 (1). https://doi.org/10.1038/s41598-019-45490-8.
• Carr, S A, S P Jungbluth, E A Eloe-Fadrosh, R Stepanauskas, T Woyke, M S Rappé, and B N Orcutt. 2019. "Carboxydotrophy Potential of Uncultivated Hydrothermarchaeota from the Subseafloor Crustal Biosphere." ISME Journal. https://doi.org/10.1038/s41396-019-0352-9.
• Chan-Yam, K, J Goordial, C Greer, A Davila, C P McKay, and L G Whyte. 2019. "Microbial Activity and Habitability of an Antarctic Dry Valley Water Track." Astrobiology 19 (6): 757–70. https://doi.org/10.1089/ast.2018.1884.
• Corte, D De, J M Martínez, M S Cretoiu, Y Takaki, T Nunoura, E Sintes, G J Herndl, and T Yokokawa. 2019. "Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics." Frontiers in Microbiology 10 (AUG). https://doi.org/10.3389/fmicb.2019.01801.
• Cotti-Rausch, B E, M W Lomas, E M Lachenmyer, E G Baumann, and T L Richardson. 2019. “Size-Fractionated Biomass and Primary Productivity of Sargasso Sea Phytoplankton.” Deep-Sea Research Part I: Oceanographic Research Papers. https://doi.org/10.1016/j.dsr.2019.103141.
• D’hondt, S, F Inagaki, B N Orcutt, and K.-U. Hinrichs. 2019. "Iodp Advances in Understanding of Subseafloor Life." Oceanography 32 (1): 198–207. https://doi.org/10.5670/OCEANOG.2019.146.
• Dheilly, N M, J M Martínez, K Rosario, P J Brindley, R N Fichorova, J Z Kaye, K D Kohl, et al. 2019. “Parasite Microbiome Project: Grand Challenges.” PLoS Pathogens 15 (10). https://doi.org/10.1371/journal.ppat.1008028
• Emerson, D. 2019. "Biogenic Iron Dust: A Novel Approach to Ocean Iron Fertilization as a Means of Large Scale Removal of Carbon Dioxide from the Atmosphere." Frontiers in Marine Science 6 (FEB). https://doi.org/10.3389/fmars.2019.00022.
• Fernández Robledo, J A, R Yadavalli, B Allam, E Pales Espinosa, M Gerdol, S Greco, R J Stevick, C A Heil, A N Tracy, et al. 2019. "From the Raw Bar to the Bench: Bivalves as Models for Human Health." Developmental and Comparative Immunology 92: 260–82. https://doi.org/10.1016/j.dci.2018.11.020.
• Floyd, M A M, A J Williams, A Grubisic, and D Emerson. 2019. "Metabolic Processes Preserved as Biosignatures in Iron-Oxidizing Microorganisms: Implications for Biosignature Detection on Mars." Astrobiology 19 (1): 40–52. https://doi.org/10.1089/ast.2017.1745.
• Goode, A G, D M Fields, S D Archer, and J M Martínez. 2019. “Physiological Responses of Oxyrrhis Marina to a Diet of Virally Infected Emiliania Huxleyi.” PeerJ 2019 (4). https://doi.org/10.7717/peerj.6722.
• Hallmann, C, B J Nettersheim, J J Brocks, A Schwelm, J M Hope, F Not, M Lomas, et al. 2020. “Reply to: Sources of C30 Steroid Biomarkers in Neoproterozoic–Cambrian Rocks and Oils.” Nature Ecology and Evolution 4 (1): 37–39. https://doi.org/10.1038/s41559-019-1049-1.
• Hopkins, J, S A Henson, A J Poulton, and W M Balch. 2019. “Regional Characteristics of the Temporal Variability in the Global Particulate Inorganic Carbon Inventory.” Global Biogeochemical Cycles 33 (11): 1328–38. https://doi.org/10.1029/2019GB006300.
• Jensen, L T, N J Wyatt, B S Twining, S Rauschenberg, W M Landing, R M Sherrell, and J N Fitzsimmons. 2019. "Biogeochemical Cycling of Dissolved Zinc in the Western Arctic (Arctic GEOTRACES GN01)." Global Biogeochemical Cycles 33 (3): 343–69. https://doi.org/10.1029/2018GB005975.
• Jones, R M, J M Goordial, and B N Orcutt. 2019. "Corrigendum: Low Energy Subsurface Environments as Extraterrestrial Analogs (Front. Microbiol. 9, 1605, 10.3389/Fmicb.2018.01605)." Frontiers in Microbiology 10 (AUG). https://doi.org/10.3389/fmicb.2019.01959.
• Kent, A G, S E Baer, C Mouginot, J S Huang, A A Larkin, M W Lomas, and A C Martiny. 2019. "Parallel Phylogeography of Prochlorococcus and Synechococcus." ISME Journal 13 (2): 430–41. https://doi.org/10.1038/s41396-018-0287-6.
• Labonté, J M, M Pachiadaki, E Fergusson, J McNichol, A Grosche, L K Gulmann, C Vetriani, S M Sievert, and R Stepanauskas. 2019. "Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System." Frontiers in Microbiology 10 (JUN). https://doi.org/10.3389/fmicb.2019.01262.
• Laufer, K, A B Michaud, H Røy, and B B Jørgensen. 2019. “Reactivity of Iron Minerals in the Seabed Toward Microbial Reduction–A Comparison of Different Extraction Techniques.” Geomicrobiology Journal. https://doi.org/10.1080/01490451.2019.1679291.
• Lefcheck, J S, B B Hughes, A J Johnson, B W Pfirrman, D B Rasher, A R Smyth, B L Williams, M W Beck, and R J Orth. 2019. "Are Coastal Habitats Important Nurseries? A Meta-Analysis." Conservation Letters. https://doi.org/10.1111/conl.12645.
• Lefcheck, J S, A A Innes-Gold, S J Brandl, R S Steneck, R E Torres, and D B Rasher. 2019. "Tropical Fish Diversity Enhances Coral Reef Functioning across Multiple Scales." Science Advances 5 (3). https://doi.org/10.1126/sciadv.aav6420.
• Lefcheck, J S, S J Brandl, A A Innes-Gold, R S Steneck, R E Torres, and D B Rasher. 2019. "Response: Commentary: Tropical Fish Diversity Enhances Coral Reef Functioning across Multiple Scales." Frontiers in Ecology and Evolution 7 (AUG). https://doi.org/10.3389/fevo.2019.00303.
• Lemkau, K L, C M Reddy, C A Carmichael, C Aeppli, R F Swarthout, and H K White. 2019. "Hurricane Isaac Brings More than Oil Ashore: Characteristics of Beach Deposits Following the Deepwater Horizon Spill." PLoS ONE 14 (3). https://doi.org/10.1371/journal.pone.0213464.
• Lomas, M W, S E Baer, S Acton, and J W Krause. 2019. "Pumped up by the Cold: Elemental Quotas and Stoichiometry of Cold-Water Diatoms." Frontiers in Marine Science 6 (JUN). https://doi.org/10.3389/fmars.2019.00286.
• Lopez, A, D Albino, S Beraki, S Broomell, R Canela, T Dingmon, S Estrada, M Fernandez, P Savalia, K Nealson, D Emerson, et al. 2019. “Genome Sequence of Mariprofundus Sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral.” Microbiology Resource Announcements 8 (39). https://doi.org/10.1128/MRA.00995-19.
• Luo, H, B B Tolar, B K Swan, C L Zhang, R Stepanauskas, M A Moran, and J T Hollibaugh. 2019. “Correction: Single-Cell Genomics Shedding Light on Marine Thaumarchaeota Diversification (The ISME Journal, (2014), 8, 3, (732-736), 10.1038/Ismej.2013.202).” ISME Journal. https://doi.org/10.1038/s41396-019-0558-x.
• MacDonald, B L, D Stalla, X He, F Rahemtulla, D Emerson, P A Dube, M R Maschmann, C E Klesner, and T A White. 2019. “Hunter-Gatherers Harvested and Heated Microbial Biogenic Iron Oxides to Produce Rock Art Pigment.” Scientific Reports 9 (1). https://doi.org/10.1038/s41598-019-53564-w.
• MacIntyre, H L, J J Cullen, S Rastin, M Waclawik, K J Franklin, N Poulton, L Lubelczyk, et al. 2019. "Inter-Laboratory Validation of the Serial Dilution Culture—Most Probable Number Method for Enumerating Viable Phytoplankton." Journal of Applied Phycology 31 (1): 491–503. https://doi.org/10.1007/s10811-018-1541-z.
• Marquis, N D, T J Bishop, N R Record, P D Countway, and J A Fernández Robledo. 2019. "Molecular Epizootiology of Toxoplasma Gondii and Cryptosporidium Parvum in the Eastern Oyster (Crassostrea Virginica) from Maine (USA)." Pathogens 8 (3). https://doi.org/10.3390/pathogens8030125.
• Martinez-Hernandez, F, I Garcia-Heredia, M L Gomez, L Maestre-Carballa, J M Martínez, and M Martinez-Garcia. 2019. "Droplet Digital PCR for Estimating Absolute Abundances of Widespread Pelagibacter Viruses." Frontiers in Microbiology 10 (JUN). https://doi.org/10.3389/fmicb.2019.01226.
• Martiny, A C, M W Lomas, W Fu, P W Boyd, Y.-L.L. Chen, G A Cutter, M J Ellwood, et al. 2019. "Biogeochemical Controls of Surface Ocean Phosphate." Science Advances 5 (8). https://doi.org/10.1126/sciadv.aax0341.
• Matheus Carnevali, P B, F Schulz, C J Castelle, R S Kantor, P M Shih, I Sharon, J M Santini, E D Becraft, R Stepanauskas, et al. 2019a. "Author Correction: Hydrogen-Based Metabolism as an Ancestral Trait in Lineages Sibling to the Cyanobacteria (Nature Communications, (2019), 10, 1, (463), 10.1038/S41467-018-08246-Y)." Nature Communications 10 (1). https://doi.org/10.1038/s41467-019-09423-3. ---. 2019b. "Hydrogen-Based Metabolism as an Ancestral Trait in Lineages Sibling to the Cyanobacteria." Nature Communications 10 (1). https://doi.org/10.1038/s41467-018-08246-y.
• McAllister, S M, R M Moore, A Gartman, G W Luther, D Emerson, and C S Chan. 2019. "The Fe(II)-Oxidizing Zetaproteobacteria: Historical, Ecological and Genomic Perspectives." FEMS Microb| iology Ecology 95 (4). https://doi.org/10.1093/femsec/fiz015.
• McClenachan, L, J H Grabowski, M Marra, C S McKeon, B P Neal, N R Record, and S B Scyphers. 2019. "Shifting Perceptions of Rapid Temperature Changes’ Effects on Marine Fisheries, 1945–2017." Fish and Fisheries. https://doi.org/10.1111/faf.12400.
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• Ohnemus, D C, R Torrie, and B S Twining. 2019. "Exposing the Distributions and Elemental Associations of Scavenged Particulate Phases in the Ocean Using Basin-Scale Multi-Element Data Sets." Global Biogeochemical Cycles 33 (6): 725–48. https://doi.org/10.1029/2018GB006145.
• Pachiadaki, M G, J M Brown, J Brown, O Bezuidt, P M Berube, S J Biller, N J Poulton, J J La Clair, M D Burkart, S Chisolm, and R Stepanauskas. 2019. “Charting the Complexity of the Marine Microbiome through Single-Cell Genomics.” Cell 179 (7): 1623-1635.e11. https://doi.org/10.1016/j.cell.2019.11.017.
• Pasulka, A, S K Hu, P D Countway, K J Coyne, S C Cary, K B Heidelberg, and D A Caron. 2019. "SSU-RRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent." Journal of Eukaryotic Microbiology. https://doi.org/10.1111/jeu.12711.
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• Price, N N, S Muko, L Legendre, R Steneck, M J H Van Oppen, R Albright, P Ang Jr., et al. 2019. "Global Biogeography of Coral Recruitment: Tropical Decline and Subtropical Increase." Marine Ecology Progress Series 621: 1–17. https://doi.org/10.3354/meps12980.
• Ramírez, G A, A I Garber, A Lecoeuvre, T D’angelo, C G Wheat, and B N Orcutt. 2019. "Ecology of Subseafloor Crustal Biofilms." Frontiers in Microbiology 10 (AUG).https://doi.org/10.3389/fmicb.2019.01983.
• Record, N R, W M Balch, and K Stamieszkin. 2019. “Century-Scale Changes in Phytoplankton Phenology in the Gulf of Maine.” PeerJ 2019 (5).https://doi.org/10.7717/peerj.6735.
• Record, N R, J A Runge, D E Pendleton, W M Balch, K T A Davies, A J Pershing, C L Johnson, K Stamieszkin, et al. 2019. "Rapid Climate-Driven Circulation Changes Threaten Conservation of Endangered North Atlantic Right Whales." Oceanography 32 (2): 162–69. https://doi.org/10.5670/oceanog.2019.201.
• Ren, M, X Feng, Y Huang, H Wang, Z Hu, S Clingenpeel, B K Swan, M M Fonseca, D Posada, R Stepanauskas, et al. 2019. "Phylogenomics Suggests Oxygen Availability as a Driving Force in Thaumarchaeota Evolution." ISME Journal. https://doi.org/10.1038/s41396-019-0418-8.
• Sackett, J D, B R Kruger, E D Becraft, J K Jarett, R Stepanauskas, T Woyke, and D P Moser. 2019. "Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface." Microbiology Resource Announcements 8 (11). https://doi.org/10.1128/MRA.01249-18.
• Sam-Yellowe, T Y, K Addepalli, R Yadavalli, and J W Peterson. 2019. “New Trichrome Stains Identify Cysts of Colpodella Sp. (Apicomplexa) and Bodo Caudatus.” International Microbiology. https://doi.org/10.1007/s10123-019-00104-1.
• Sam-Yellowe, T Y, R Yadavalli, H Fujioka, J W Peterson, and J A Drazba. 2019. “RhopH3, Rhoptry Gene Conserved in the Free-Living Alveolate Flagellate Colpodella Sp. (Apicomplexa).” European Journal of Protistology 71. https://doi.org/10.1016/j.ejop.2019.125637.
• Schuetz, J G, K E Mills, A J Allyn, K Stamieszkin, A L Bris, and A J Pershing. 2019. "Complex Patterns of Temperature Sensitivity, Not Ecological Traits, Dictate Diverse Species Responses to Climate Change." Ecography 42 (1): 111–24. https://doi.org/10.1111/ecog.03823.
• Sieracki, M E, N J Poulton, O Jaillon, P Wincker, C de Vargas, L Rubinat-Ripoll, R Stepanauskas, R Logares, and R Massana. 2019. "Single Cell Genomics Yields a Wide Diversity of Small Planktonic Protists across Major Ocean Ecosystems." Scientific Reports 9 (1): 6025. https://doi.org/10.1038/s41598-019-42487-1.
• Stal, L J, H Bolhuis, and M S Cretoiu. 2019. "Phototrophic Marine Benthic Microbiomes: The Ecophysiology of These Biological Entities." Environmental Microbiology 21 (5): 1529–51. https://doi.org/10.1111/1462-2920.14494.
• Staudinger, M D, K E Mills, K Stamieszkin, N R Record, C A Hudak, A Allyn, A Diamond, et al. 2019. "It’s about Time: A Synthesis of Changing Phenology in the Gulf of Maine Ecosystem." Fisheries Oceanography. https://doi.org/10.1111/fog.12429.
• Steneck, R S, S N Arnold, R Boenish, R de León, P J Mumby, D B Rasher, and M W Wilson. 2019. "Managing Recovery Resilience in Coral Reefs against Climate-Induced Bleaching and Hurricanes: A 15 Year Case Study from Bonaire, Dutch Caribbean." Frontiers in Marine Science 6 (JUN). https://doi.org/10.3389/fmars.2019.00265.
• Tagliabue, A, A R Bowie, T DeVries, M J Ellwood, W M Landing, A Milne, D C Ohnemus, B S Twining, and P W Boyd. 2019. “The Interplay between Regeneration and Scavenging Fluxes Drives Ocean Iron Cycling.” Nature Communications 10 (1). https://doi.org/10.1038/s41467-019-12775-5.
• Thomas, H J D, I H Myers-Smith, A D Bjorkman, S C Elmendorf, D Blok, J H C Cornelissen, B C Forbes, K C Guay, et al. 2019. "Traditional Plant Functional Groups Explain Variation in Economic but Not Size-Related Traits across the Tundra Biome." Global Ecology and Biogeography 28 (2): 78–95. https://doi.org/10.1111/geb.12783.
• Thompson, C R S, D M Fields, R M Bjelland, V B S Chan, C M F Durif, A Mount, J A Runge, S D Shema, A B Skiftesvik, and H I Browman. 2019. “The Planktonic Stages of the Salmon Louse (Lepeophtheirus Salmonis) Are Tolerant of End-of-Century PCO2 Concentrations.” PeerJ 2019 (10). https://doi.org/10.7717/peerj.7810.
• Topor, Z M, D B Rasher, J E Duffy, and S J Brandl. 2019. "Marine Protected Areas Enhance Coral Reef Functioning by Promoting Fish Biodiversity." Conservation Letters. https://doi.org/10.1111/conl.12638.
• Torres-Beltrán, M, A Mueller, M Scofield, M G Pachiadaki, C Taylor, K Tyshchenko, C Michiels, et al. 2019. "Sampling and Processing Methods Impact Microbial Community Structure and Potential Activity in a Seasonally Anoxic Fjord: Saanich Inlet, British Columbia." Frontiers in Marine Science 6 (MAR). https://doi.org/10.3389/fmars.2019.00132.
• Twining, B S, S Rauschenberg, S E Baer, M W Lomas, A C Martiny, and O Antipova. 2019. "A Nutrient Limitation Mosaic in the Eastern Tropical Indian Ocean." Deep-Sea Research Part II: Topical Studies in Oceanography. https://doi.org/10.1016/j.dsr2.2019.05.001.
• Valente, A, S Sathyendranath, V Brotas, S Groom, M Grant, M Taberner, D Antoine, W M Balch, et al. 2019. "A Compilation of Global Bio-Optical in Situ Data for Ocean-Colour Satellite Applications - Version Two." Earth System Science Data 11 (3): 1037–68. https://doi.org/10.5194/essd-11-1037-2019.
• Villinger, H W, P Müller, W Bach, K Becker, B N Orcutt, N Kaul, and C G Wheat. 2019. "Evidence for Low-Temperature Diffuse Venting at North Pond, Western Flank of the Mid-Atlantic Ridge." Geochemistry, Geophysics, Geosystems. https://doi.org/10.1029/2018GC008113.
• Wang, Y, J.-M. Huang, G.-J. Cui, T Nunoura, Y Takaki, W.-L. Li, J Li, R Stepanauskas, et al. 2019. "Genomics Insights into Ecotype Formation of Ammonia-Oxidizing Archaea in the Deep Ocean." Environmental Microbiology 21 (2): 716–29. https://doi.org/10.1111/1462-2920.14518.
• Ward, C P, C M Sharpless, D L Valentine, C Aeppli, K M Sutherland, S D Wankel, and C M Reddy. 2019. "Oxygen Isotopes (Δ18O) Trace Photochemical Hydrocarbon Oxidation at the Sea Surface." Geophysical Research Letters. https://doi.org/10.1029/2019GL082867.
• Weissburg, M J, J Yen, and D M Fields. 2019. "Phytoplankton Odor Modifies the Response of Euphausia Superba to Flow." Polar Biology 42 (3): 509–16. https://doi.org/10.1007/s00300-018-02440-w.
• Wheat, C G, A M Hartwell, J McManus, A T Fisher, B N Orcutt, L E M Schlicht, S Niedenzu, and W Bach. 2019. "Geology and Fluid Discharge at Dorado Outcrop, a Low Temperature Ridge-Flank Hydrothermal System." Geochemistry, Geophysics, Geosystems 20 (1): 487–504. https://doi.org/10.1029/2018GC007933.
• White, H K, C T Marx, D L Valentine, C Sharpless, C Aeppli, K M Gosselin, V Kivenson, et al. 2019. "Examining Inputs of Biogenic and Oil-Derived Hydrocarbons in Surface Waters Following the Deepwater Horizon Oil Spill." ACS Earth and Space Chemistry. https://doi.org/10.1021/acsearthspacechem.9b00090.
• Whitmore, L M, P L Morton, B S Twining, and A M Shiller. 2019. "Vanadium Cycling in the Western Arctic Ocean Is Influenced by Shelf-Basin Connectivity." Marine Chemistry 216. https://doi.org/10.1016/j.marchem.2019.103701.
• Wilkins, L G E, M Leray, A O’Dea, B Yuen, R S Peixoto, T J Pereira, H M Bik, D A Coil, J E Duffy, E A Herre, H A Lessios, N M Lucey, L C Meija, D B Rasher, et al. 2019. “Host-Associated Microbiomes Drive Structure and Function of Marine Ecosystems.” PLoS Biology 17 (11). https://doi.org/10.1371/journal.pbio.3000533.
• Yakubovskaya, E, T Zaliznyak, J Martínez Martínez, and G T Taylor. 2019. “Tear Down the Fluorescent Curtain: A New Fluorescence Suppression Method for Raman Microspectroscopic Analyses.” Scientific Reports 9 (1). https://doi.org/10.1038/s41598-019-52321-3.
• Yao, X, R E Sipler, B C Stanley, Q N Roberts, M P Sanderson, C B Bott, and D A Bronk. 2019. "Quantifying Effluent Dissolved Organic Nitrogen (EDON) Uptake by Microbial Communities Along a Salinity Gradient in the York River." Estuaries and Coasts 42 (5): 1265–80. https://doi.org/10.1007/s12237-019-00563-9.
• Youssef, N H, I F Farag, C R Hahn, J Jarett, E Becraft, E Eloe-Fadrosh, J Lightfoot, A Bourgeois, T Cole, S Ferrante, M Truelock, W Marsh, M Jamaleddine, S Ricketts, R Simpson, A McFadden, W Hoff, N V Ravin, S Sievert, R Stepanauskas, et al. 2019. "Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities." Applied and Environmental Microbiology 85 (10). https://doi.org/10.1128/AEM.00110-19.

2018

• Aeppli, C, R F Swarthout, G W O’Neil, S D Katz, D Nabi, C P Ward, R K Nelson, C M Sharpless, and C M Reddy. 2018. "How Persistent and Bioavailable Are Oxygenated Deepwater Horizon Oil Transformation Products?" Environmental Science and Technology 52 (13): 7250–58. https://doi.org/10.1021/acs.est.8b01001.
• Archer, S D, J Stefels, R L Airs, T Lawson, T J Smyth, A P Rees, and R J Geider. 2018. "Limitation of Dimethylsulfoniopropionate Synthesis at High Irradiance in Natural Phytoplankton Communities of the Tropical Atlantic." Limnology and Oceanography 63 (1): 227–42. https://doi.org/10.1002/lno.10625.
• Archer, S D, K Suffrian, K M Posman, L T Bach, P A Matrai, P D Countway, A Ludwig, and U Riebesell. 2018. "Processes That Contribute to Decreased Dimethyl Sulfide Production in Response to Ocean Acidification in Subtropical Waters." Frontiers in Marine Science 5 (JUL). https://doi.org/10.3389/fmars.2018.00245.
• Baer, S E, S Rauschenberg, C A Garcia, N S Garcia, A C Martiny, B S Twining, and M W Lomas. 2018. "Carbon and Nitrogen Productivity during Spring in the Oligotrophic Indian Ocean along the GO-SHIP IO9N Transect." Deep-Sea Research Part II: Topical Studies in Oceanography. https://doi.org/10.1016/j.dsr2.2018.11.008.
• Balch, W M. 2018. "The Ecology, Biogeochemistry, and Optical Properties of Coccolithophores." Annual Review of Marine Science 10: 71–98. https://doi.org/10.1146/annurev-marine-121916-063319.
• Balch, W M, B C Bowler, D T Drapeau, L C Lubelczyk, and E Lyczkowski. 2018. "Vertical Distributions of Coccolithophores, PIC, POC, Biogenic Silica, and Chlorophyll a Throughout the Global Ocean." Global Biogeochemical Cycles 32 (1): 2–17. https://doi.org/10.1002/2016GB005614.
• Barnes, A D, M Jochum, J S Lefcheck, N Eisenhauer, C Scherber, M I O’Connor, P de Ruiter, and U Brose. 2018. "Energy Flux: The Link between Multitrophic Biodiversity and Ecosystem Functioning." Trends in Ecology and Evolution 33 (3): 186–97. https://doi.org/10.1016/j.tree.2017.12.007.
• Beam, J P, J J Scott, S M McAllister, C S Chan, J McManus, F J R Meysman, and D Emerson. 2018. "Biological Rejuvenation of Iron Oxides in Bioturbated Marine Sediments." ISME Journal 12 (5): 1389–94. https://doi.org/10.1038/s41396-017-0032-6.
• Berube, P M, S J Biller, T Hackl, S L Hogle, B M Satinsky, J W Becker, R Braakman, S B Collins, L Kelly, J Berta-Thompson, A Coe, K Bergauer, H A Bouman, T J Browning, D De Corte, C Hassler, Y Hulata, J E Jacquot, E W Maas, T Reinthaler, E Sintes, T Yokokawa, D Lindell, R Stepanauskas, and S W Chisolm. 2018. "Data Descriptor: Single Cell Genomes of Prochlorococcus, Synechococcus, and Sympatric Microbes from Diverse Marine Environments." Scientific Data 5. https://doi.org/10.1038/sdata.2018.154.
• Bjorkman, A D, I H Myers-Smith, S C Elmendorf, S Normand, N Rüger, P S A Beck, A Blach, Overgaard, D Blok, J H C Cornelissen, B C Forbes, D Georges, S J Goetz, K C Guay, et al. 2018. "Plant Functional Trait Change across a Warming Tundra Biome." Nature 562 (7725): 57–62. https://doi.org/10.1038/s41586-018-0563-7.
• Boccadoro, C, A Krolicka, J Receveur, C Aeppli, and S Le Floch. 2018. "Microbial Community Response and Migration of Petroleum Compounds during a Sea-Ice Oil Spill Experiment in Svalbard." Marine Environmental Research, 214–33. https://doi.org/10.1016/j.marenvres.2018.09.007.
• Bornbusch, S L, J S Lefcheck, and J E Duffy. 2018. "Allometry of Individual Reproduction and Defense in Eusocial Colonies: A Comparative Approach to Trade-Offs in Social Sponge-Dwelling Synalpheus Shrimps." PLoS ONE 13 (3). https://doi.org/10.1371/journal.pone.0193305.
• Bostic, J T, C Aeppli, R F Swarthout, C M Reddy, and L A Ziolkowski. 2018. "Ongoing Biodegradation of Deepwater Horizon Oil in Beach Sands: Insights from Tracing Petroleum Carbon into Microbial Biomass." Marine Pollution Bulletin 126: 130–36. https://doi.org/10.1016/j.marpolbul.2017.10.058.
• Bourne, H L, J K B Bishop, P J Lam, and D C Ohnemus. 2018. "Global Spatial and Temporal Variation of Cd:P in Euphotic Zone Particulates." Global Biogeochemical Cycles 32 (7): 1123–41. https://doi.org/10.1029/2017GB005842.
• Brady, A L, J Goordial, H J Sun, L G Whyte, and G F Slater. 2018. "Variability in Carbon Uptake and (Re)Cycling in Antarctic Cryptoendolithic Microbial Ecosystems Demonstrated through Radiocarbon Analysis of Organic Biomarkers." Geobiology 16 (1): 62–79. https://doi.org/10.1111/gbi.12263.
• Cao, X, G R Aiken, K D Butler, T G Huntington, W M Balch, J Mao, and K Schmidt-Rohr. 2018. "Evidence for Major Input of Riverine Organic Matter into the Ocean." Organic Geochemistry 116: 62–76. https://doi.org/10.1016/j.orggeochem.2017.11.001.
• Carr, S A, F Schubotz, R B Dunbar, C T Mills, R Dias, R E Summons, and K W Mandernack. 2018. "Acetoclastic Methanosaeta Are Dominant Methanogens in Organic-Rich Antarctic Marine Sediments." ISME Journal 12 (2): 330–42. https://doi.org/10.1038/ismej.2017.150.
• Chong, L S, W M Berelson, J McManus, and N E Rollins. 2018. "Meter-Scale Early Diagenesis of Organic Matter Buried within Deep-Sea Sediments beneath the Amazon River Plume." Frontiers in Marine Science 5 (JUL). https://doi.org/10.3389/fmars.2018.00250.
• Clements, C S, D B Rasher, A S Hoey, V E Bonito, and M E Hay. 2018. "Spatial and Temporal Limits of Coral-Macroalgal Competition: The Negative Impacts of Macroalgal Density, Proximity, and History of Contact." Marine Ecology Progress Series 586: 11–20. https://doi.org/10.3354/meps12410.
• Cohen, N R, K A Ellis, R H Lampe, H McNair, B S Twining, M T Maldonado, M A Brzezinski, F I Kuzminov, K Thamatrakoln, C P Till, K W Bruland, W G Sunda, S Bargu, and A Marchetti. 2018. "Corrigendum: Diatom Transcriptional and Physiological Responses to Changes in Iron Bioavailability across Ocean Provinces [Front. Mar. Sci., 4, (2017), (360)] Doi: 10.3389/Fmars.2017.00360." Frontiers in Marine Science 5 (APR). https://doi.org/10.3389/fmars.2018.00115.
• Cohen, N R, E Mann, B Stemple, C M Moreno, S Rauschenberg, J E Jacquot, W G Sunda, B S Twining, and A Marchetti. 2018. "Iron Storage Capacities and Associated Ferritin Gene Expression among Marine Diatoms." Limnology and Oceanography 63 (4): 1677–91. https://doi.org/10.1002/lno.10800.
• Cree, C H L, R Airs, S D Archer, and M F Fitzsimons. 2018. "Measurement of Methylamines in Seawater Using Solid Phase Microextraction and Gas Chromatography." Limnology and Oceanography: Methods 16 (7): 411–20. https://doi.org/10.1002/lom3.10255.
• Daniels, C J, A J Poulton, W M Balch, E Marañón, T Adey, B C Bowler, P Cermeño, A Charalampopoulou, D W Crawford, D Drapeau, Y Feng, A Fernández, E Fernández, G M Fragoso, N González, L M Graziano, R Heslop, P M Holligan, J Hopkins, M Huete-Ortega, D A Hutchins, P J Lam, M S Lipsen, D C López-Sandoval, S Loucaides, A Marchetti, K M J Mayers, A P Rees, C Sobrino, E Tynan, and T Tyrrell. 2018. "A Global Compilation of Coccolithophore Calcification Rates." Earth System Science Data 10 (4): 1859–76. https://doi.org/10.5194/essd-10-1859-2018.
• Fernández Robledo, J A, N D Marquis, P D Countway, N R Record, E L Irish, M M Schuldt, S E Kingston, T J Bishop, N A Messerman, and T J Bowden. 2018. "Pathogens of Marine Bivalves in Maine (USA): A Historical Perspective." Aquaculture 493: 9–17. https://doi.org/10.1016/j.aquaculture.2018.04.042.
• Fields, D M, A B Skiftesvik, and H I Browman. 2018. "Behavioural Responses of Infective-Stage Copepodids of the Salmon Louse (Lepeophtheirus Salmonis, Copepoda:Caligidae) to Host-Related Sensory Cues." Journal of Fish Diseases 41 (6): 875–84. https://doi.org/10.1111/jfd.12690.
• Fleming, E J, T Woyke, R A Donatello, M M M Kuypers, A Sczyrba, S Littmann, and D Emerson. 2018. "Insights into the Fundamental Physiology of the Uncultured Fe-Oxidizing Bacterium Leptothrix Ochracea." Applied and Environmental Microbiology 84 (9). https://doi.org/10.1128/AEM.02239-17.
• Früh-Green, G L, B N Orcutt, S Rouméjon, M D Lilley, Y Morono, C Cotterill, S Green, J Escartin, B E John, A M McCaig, M Cannat, B Ménez, E M Schwarzenbach, M J Williams, S Morgan, S Q Lang, M O Schrenk, W J Brazelton, N Akizawa, C Boschi, K G Dunkel, M Quéméneur, S A Whattam, L Mayhew, M Harris, G Bayrakci, J.-H. Behrmann, E Herrero-Bervera, K Hesse, H.-Q. Liu, A S Ratnayake, K Twing, D Weis, R Zhao, and L Bilenker. 2018. "Magmatism, Serpentinization and Life: Insights through Drilling the Atlantis Massif (IODP Expedition 357)." Lithos 323: 137–55. https://doi.org/10.1016/j.lithos.2018.09.012.
• Gabric, A, P Matrai, G Jones, and J Middleton. 2018. "The Nexus between Sea Ice and Polar Emissions of Marine Biogenic Aerosols." Bulletin of the American Meteorological Society 99 (1): 61–82. https://doi.org/10.1175/BAMS-D-16-0254.1.
• Garcia, C A, S E Baer, N S Garcia, S Rauschenberg, B S Twining, M W Lomas, and A C Martiny. 2018. "Nutrient Supply Controls Particulate Elemental Concentrations and Ratios in the Low Latitude Eastern Indian Ocean." Nature Communications 9 (1): 4868. https://doi.org/10.1038/s41467-018-06892-w.
• Garcia, N S, J Sexton, T Riggins, J Brown, M W Lomas, and A C Martiny. 2018. "High Variability in Cellular Stoichiometry of Carbon, Nitrogen, and Phosphorus within Classes of Marine Eukaryotic Phytoplankton under Sufficient Nutrient Conditions." Frontiers in Microbiology 9 (MAR). https://doi.org/10.3389/fmicb.2018.00543.
• Garcia, S L, S L R Stevens, B Crary, M Martinez-Garcia, R Stepanauskas, T Woyke, S G Tringe, S G E Andersson, S Bertilsson, R R Malmstrom, and K D McMahon. 2018. "Contrasting Patterns of Genome-Level Diversity across Distinct Co-Occurring Bacterial Populations." ISME Journal 12 (3): 742–55. https://doi.org/10.1038/s41396-017-0001-0.
• Glass, J B, S Chen, K S Dawson, D R Horton, S Vogt, E D Ingall, B S Twining, and V J Orphan. 2018. "Trace Metal Imaging of Sulfate-Reducing Bacteria and Methanogenic Archaea at Single-Cell Resolution by Synchrotron X-Ray Fluorescence Imaging." Geomicrobiology Journal 35 (1): 81–89. https://doi.org/10.1080/01490451.2017.1321068.
• Goordial, J, and J Ronholm. 2018. "Metagenomics Meets Read Clouds." Nature Biotechnology 36 (11): 1049–51. https://doi.org/10.1038/nbt.4284.
• Grace, J B, D J Johnson, J S Lefcheck, and J E K Byrnes. 2018. "Quantifying Relative Importance: Computing Standardized Effects in Models with Binary Outcomes." Ecosphere 9 (6). https://doi.org/10.1002/ecs2.2283.
• Green, H S, S A Fuller, A W Meyer, P S Joyce, C Aeppli, R K Nelson, R F Swarthout, D L Valentine, H K White, and C M Reddy. 2018. "Pelagic Tar Balls Collected in the North Atlantic Ocean and Caribbean Sea from 1988 to 2016 Have Natural and Anthropogenic Origins." Marine Pollution Bulletin 137: 352–59. https://doi.org/10.1016/j.marpolbul.2018.10.030.
• Harding, K, K A Turk-Kubo, R E Sipler, M M Mills, D A Bronk, and J P Zehr. 2018. "Symbiotic Unicellular Cyanobacteria Fix Nitrogen in the Arctic Ocean." Proceedings of the National Academy of Sciences of the United States of America 115 (52): 13371–75. https://doi.org/10.1073/pnas.1813658115.
• Hawco, N J, P J Lam, J.-M. Lee, D C Ohnemus, A E Noble, N J Wyatt, M C Lohan, and M A Saito. 2018. "Cobalt Scavenging in the Mesopelagic Ocean and Its Influence on Global Mass Balance: Synthesizing Water Column and Sedimentary Fluxes." Marine Chemistry 201: 151–66. https://doi.org/10.1016/j.marchem.2017.09.001.
• Hayes, C T, E E Black, R F Anderson, M Baskaran, K O Buesseler, M A Charette, H Cheng, J K Cochran, R L Edwards, P Fitzgerald, P J Lam, Y Lu, S O Morris, D C Ohnemus, F J Pavia, G Stewart, Y Tang. 2018. "Flux of Particulate Elements in the North Atlantic Ocean Constrained by Multiple Radionuclides." Global Biogeochemical Cycles. School of Ocean Science and Engineering, University of Southern Mississippi Stennis Space CenterMS, United States. https://doi.org/10.1029/2018GB005994.
• Hedayatkhah, A, M S Cretoiu, G Emtiazi, L J Stal, and H Bolhuis. 2018. "Bioremediation of Chromium Contaminated Water by Diatoms with Concomitant Lipid Accumulation for Biofuel Production." Journal of Environmental Management 227: 313–20. https://doi.org/10.1016/j.jenvman.2018.09.011.
• Henson, S A, H S Cole, J Hopkins, A P Martin, and A Yool. 2018. "Detection of Climate Change-Driven Trends in Phytoplankton Phenology." Global Change Biology 24 (1): e101–11. https://doi.org/10.1111/gcb.13886.
• Hoffman, C L, S L Nicholas, D C Ohnemus, J N Fitzsimmons, R M Sherrell, C R German, M I Heller, J.-M. Lee, P J Lam, and B M Toner. 2018. "Near-Field Iron and Carbon Chemistry of Non-Buoyant Hydrothermal Plume Particles, Southern East Pacific Rise 15°S." Marine Chemistry 201: 183–97. https://doi.org/10.1016/j.marchem.2018.01.011.
• Hogle, S L, C L Dupont, B M Hopkinson, A L King, K N Buck, K L Roe, R K Stuart, A E Allen, E L Mann, Z I Johnson, and K A Barbeau. 2018. "Pervasive Iron Limitation at Subsurface Chlorophyll Maxima of the California Current." Proceedings of the National Academy of Sciences of the United States of America 115 (52): 13300–305. https://doi.org/10.1073/pnas.1813192115.
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• Rouméjon, S, G L Früh-Green, B N Orcutt, S Green, C Cotterill, S Morgan, N Akizawa, G Bayrakci, J.-H. Behrmann, E Herrero-Bervera, C Boschi, W Brazelton, M Cannat, K G Dunkel, J Escartin, M Harris, K Hesse, B John, S Q Lang, M Lilley, H.-Q. Liu, L Mayhew, A McCaig, B Menez, Y Morono, M Quéméneur, A S Ratnayake, M Schrenk, E Schwarzenbach, K Twing, D Weis, S A Whattam, M Williams, and R Zhao. 2018. "Alteration Heterogeneities in Peridotites Exhumed on the Southern Wall of the Atlantis Massif (IODP Expedition 357)." Journal of Petrology 59 (7): 1329–58. https://doi.org/10.1093/petrology/egy065.
• Sánchez-García, L, C Aeppli, V Parro, D Fernández-Remolar, M García-Villadangos, G Chong-Diaz, Y Blanco, and D Carrizo. 2018. "Molecular Biomarkers in the Subsurface of the Salar Grande (Atacama, Chile) Evaporitic Deposits." Biogeochemistry 140 (1): 31–52. https://doi.org/10.1007/s10533-018-0477-3.
• Schlitzer, R, R F Anderson, E M Dodas, M Lohan, W Geibert, A Tagliabue, A Bowie, C Jeandel, M T Maldonado, W M Landing, D Cockwell, D C Ohnemus, S Rauschenberg, S Twining, et al. 2018. "The GEOTRACES Intermediate Data Product 2017." Chemical Geology 493: 210–23. https://doi.org/10.1016/j.chemgeo.2018.05.040.
• Seeleuthner, Y, S Mondy, V Lombard, Q Carradec, E Pelletier, M Wessner, J Leconte, N Poulton, R Stepanauskas, M Sieracki, et al. 2018. "Single-Cell Genomics of Multiple Uncultured Stramenopiles Reveals Underestimated Functional Diversity across Oceans." Nature Communications 9 (1). https://doi.org/10.1038/s41467-017-02235-3.
• Smith, H, K Abuyen, J Tremblay, P Savalia, I Pérez-Rodríguez, D Emerson, B Tully, and J Amend. 2018. "Genome Sequence of Geothermobacter Sp. Strain HR-1, an Iron Reducer from the Lō’ihi Seamount, Hawai’i." Genome Announcements 6 (21). https://doi.org/10.1128/genomeA.00339-18.
• Spackeen, J L, D A Bronk, R E Sipler, E M Bertrand, D A Hutchins, and A E Allen. 2018. "Stoichiometric N:P Ratios, Temperature, and Iron Impact Carbon and Nitrogen Uptake by Ross Sea Microbial Communities." Journal of Geophysical Research: Biogeosciences 123 (9): 2955–75. https://doi.org/10.1029/2017JG004316.
• Spackeen, J L, R E Sipler, E M Bertrand, K Xu, J B McQuaid, N G Walworth, D A Hutchins, A E Allen, and D A Bronk. 2018. "Impact of Temperature, CO2, and Iron on Nutrient Uptake by a Late-Season Microbial Community from the Ross Sea, Antarctica." Aquatic Microbial Ecology 82 (2): 145–59. https://doi.org/10.3354/ame01886.
• Stal, L J, H Bolhuis, and M S Cretoiu. 2018. "Phototrophic Marine Benthic Microbiomes: The Ecophysiology of These Biological Entities." Environmental Microbiology. IBED Department of Freshwater and Marine Ecology, University of Amsterdam, Amsterdam, Netherlands. https://doi.org/10.1111/1462-2920.14494.
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• Suter, E A, M Pachiadaki, G T Taylor, Y Astor, and V P Edgcomb. 2018. "Free-Living Chemoautotrophic and Particle-Attached Heterotrophic Prokaryotes Dominate Microbial Assemblages along a Pelagic Redox Gradient." Environmental Microbiology 20 (2): 693–712. https://doi.org/10.1111/1462-2920.13997.
• Taillandier, V, T Wagener, F D’Ortenzio, N Mayot, H Legoff, J Ras, L Coppola, O Pasqueron De Fommervault, C Schmechtig, E Diamond, H Bittig, D Lefevre, E Leymarie, A Poteau, and L Prieur. 2018. "Hydrography and Biogeochemistry Dedicated to the Mediterranean BGC-Argo Network during a Cruise with RV Tethys 2 in May 2015." Earth System Science Data 10 (1): 627–41. https://doi.org/10.5194/essd-10-627-2018.
• Taylor, G T, E A Suter, M G Pachiadaki, Y Astor, V P Edgcomb, and M I Scranton. 2018. "Temporal Shifts in Dominant Sulfur-Oxidizing Chemoautotrophic Populations across the Cariaco Basin’s Redoxcline." Deep-Sea Research Part II: Topical Studies in Oceanography 156: 80–96. https://doi.org/10.1016/j.dsr2.2017.11.016.
• Thomas, H J D, I H Myers-Smith, A D Bjorkman, S C Elmendorf, D Blok, J H C Cornelissen, B C Forbes, K C Guay, et al. 2018. "Traditional Plant Functional Groups Explain Variation in Economic but Not Size-Related Traits across the Tundra Biome." Global Ecology and Biogeography. School of Geosciences, University of Edinburgh, Edinburgh, United Kingdom. https://doi.org/10.1111/geb.12783.
• Torres-Beltrán, M, T Sehein, M G Pachiadaki, S J Hallam, and V Edgcomb. 2018. "Protistan Parasites along Oxygen Gradients in a Seasonally Anoxic Fjord: A Network Approach to Assessing Potential Host-Parasite Interactions." Deep-Sea Research Part II: Topical Studies in Oceanography 156: 97–110. https://doi.org/10.1016/j.dsr2.2017.12.026.
• Vesenka, J, J Havu, K Hruby, and D Emerson. 2018. "A Model for Sheath Formation Coupled to Motility in Leptothrix Ochracea." Geomicrobiology Journal 35 (5): 366–74. https://doi.org/10.1080/01490451.2017.1370516.
• Wan, X S, H.-X. Sheng, M Dai, Y Zhang, D Shi, T W Trull, Y Zhu, M W Lomas, and S.-J. Kao. 2018. "Ambient Nitrate Switches the Ammonium Consumption Pathway in the Euphotic Ocean." Nature Communications 9 (1). https://doi.org/10.1038/s41467-018-03363-0.
• Wang, L, L A Kerr, N R Record, E Bridger, B Tupper, K E Mills, E M Armstrong, and A J Pershing. 2018. "Modeling Marine Pelagic Fish Species Spatiotemporal Distributions Utilizing a Maximum Entropy Approach." Fisheries Oceanography 27 (6): 571–86. https://doi.org/10.1111/fog.12279.
• Ward, C P, C M Sharpless, D L Valentine, D P French-McCay, C Aeppli, H K White, R P Rodgers, K M Gosselin, R K Nelson, and C M Reddy. 2018. "Partial Photochemical Oxidation Was a Dominant Fate of Deepwater Horizon Surface Oil." Environmental Science and Technology 52 (4): 1797–1805. https://doi.org/10.1021/acs.est.7b05948.
• Weidhaas, J, A Panaccione, A S Bhattacharjee, R Goel, A Anderson, and S P Acharya. 2018. "Whole Community Transcriptome of a Sequencing Batch Reactor Transforming 2,4-Dinitroanisole (DNAN) and 3-Nitro-1,2,4-Triazol-5-One (NTO)." Biodegradation 29 (1): 71–88. https://doi.org/10.1007/s10532-017-9814-9.
• White, M M, D T Drapeau, L C Lubelczyk, V C Abel, B C Bowler, and W M Balch. 2018. "Calcification of an Estuarine Coccolithophore Increases with Ocean Acidification When Subjected to Diurnally Fluctuating Carbonate Chemistry." Marine Ecology Progress Series 601: 59–76. https://doi.org/10.3354/meps12639.
• White, M M, J D Waller, L C Lubelczyk, D T Drapeau, B C Bowler, W M Balch, and D M Fields. 2018. "Coccolith Dissolution within Copepod Guts Affects Fecal Pellet Density and Sinking Rate." Scientific Reports 8 (1). https://doi.org/10.1038/s41598-018-28073-x.
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2017

• Archer SD, J Stefels, RL airs, T Lawson, TJ Smyth, AP Rees, RJ Geider. 2017. Limitation of dimethylsulfoniopropionate synthesis at high irradiance in natural phytoplankton communities of the Tropical Atlantic. Limnology and Oceanography, DOI: 10.1002/LNO.10625. (August 2017)
• Sipler RE, D Gong, SE Baer, M Sanderson, QN Roberts, MR Mulholland, D Bronk. 2017. Preliminary estimates of the contribution of Arctic nitrogen fixation to the global nitrogen budget. Limnology and Oceanography Letters, DOI: 10.1002/1012.10046. (July 2017)
• Baer SE, a. RE Sipler, QN Roberts, PL Yager, ME Frischer, DA Bronk. 2017. Seasonal nitrogen uptake and regeneration in the western coastal Arctic. Limnology and Oceanography, V. 62(6), pp. 2463-2479. (November 2017)
• Sipler RE, SE Baer, TL Connelly, ME Frischer, QN Roberts, PL Yager, DA Bronk. 2017. Chemical and photophysiological impact of terrestrially- derived dissolved organic matter on nitrate uptake in the coastal western Arctic. Limnology and Oceanography. DOI: 10.1002/lno.10541. (March 2017)
• Baer SE, MW Lomas, KX Terpis, C Mouginot, AC Martiny. 2017. Stoichiometry of Prochlorococcus, Synechococcus, and small eukaryotic populations in the western North Atlantic Ocean. Environmental Microbiology, DOI: 10.1111/1462- 2920.13672. (January 2017)
• Wawrik B, DA Bronk, SE Baer, L Chi, M Sun, JT Cooper, Z Yang. 2017. Bacterial utilization of creatine in seawater. Aquatic Microbial Ecology. DOI: 10.3354/ameOl850. (January 2017)
• He S, RA Barco, D Emerson, EE Roden. 2017. Comparative genomic analysis of neutrophilic iron(II) oxidizer genomes for candidate genes in extracellular electron transfer. Frontiers in Microbiology, DOI: 10.3389/fmicb.2017.01584. (August 2017)
• Jennings R, JJ Moran, ZJ Jay, J Beam, L Whitmore, MA Kozubal, HW Kreuzer, WP Inskeep. 2017. Integration of metagenomics and stable carbon isotope evidence reveals the extent and mechanisms of carbon dioxide fixation in high-temperature microbial communities. Frontiers in Microbiology V. 8, DOI: 10.3389/fmicb.2017.00088. (February 2017)
• Mesle M, J Beam, ZJ Jay, B Bodle, E Bogenschutz, WP Inskeep. 2017. Hydrogen peroxide cycling in high-temperature acidic geothermal springs and potential implications for oxidative stress response. Frontiers in Marine Science, V. 4. DOI: 10.3389/fmars.2017.00130. (May 2017)
• Moran JJ, L Whitmore, ZJ Jay, R de M Jennings, J Beam, HW Kreuzer, WP Inskeep. 2017. Dual stable isotopes of CH4 from Yellowstone hot-springs suggest hydrothermal processes involving magmatic CO₂. Journal of Volcanology and Geothermal Research. DOI: 10.1016/j.jvolgeores.2017.05.011. (May 2017)
• Becraft ED, T Woyke, J Jarett, N Ivanova, F Godoy-Vitorino, NJ Poulton, JM Brown, J Brown. 2017. Rokubacteria: genomic giants among the uncultured bacterial phyla. Frontiers in Microbiology, V. 8, Article: 2264. (November 2017)
• Becraft ED, J Dodsworth, SK Murugapiran, SC Thomas, I Ohlsson, R Stepanauskas, B Hedlund WD Swingley. 2017. Genomic comparison of two family-level groups of the uncultivated NAG1 archaeal lineage from chemically and geographically disparate hot springs. Frontiers in Microbiology, V. 8. DOI: 10.3389/fmicb.2017.02082. (October 2017)
• Bhattacharjee AS, AM Motlagh, E Gilcrease, MI Islam, S Casjens, R Goel. 2017. Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1. Standards in Genomic Sciences, DOI: 10.1186/s40793-017-0290-y. (November 2017)
• Weidhaas J, A Panaccione, AS Bhattacharjee, R Goel, A Anderson, SP Acharya. 2017. Whole community transcriptome of a sequencing batch reactor transforming 2,4-dinitroanisole (DNAN) and 3-nirto-1,2,4-triazol-5-one (NTO). Biodegradation, pp. 1-18. (November 2017)
• Pappu AR, AS Bhattacharjee, S Dasgupta, R Goel. 2017. Nitrogen cycle in engineered and natural ecosystems- past and current. Current Pollution Reports, V. 3(2), pp. 120-140. (June 2017)
• Bhattacharjee AS, S Wu, SE Lawson, JSM Jetten, V Kapoor, JS Domingo, K Mcmahon, DR Noguera, R Goel. 2017. Whole community metagenomics in two different anammox configurations: process performance and community structure. Environmental Science and Technology, DOI: 10.1021/acs.est.6b05855. (March 2017)
• Leavitt JC, AJ Heitkamp, AS Bhattacharjee, EB Gilcrease, S Casjens. 2017. Genome sequence of Escherichia coli tailed phage Utah. Genome Announcements, V. 5(13): e01494-16. (March 2017)
• Lawson CE, S Wu, AS Bhattacharjee, JJ Hamiilton, K Mcmahon, R Goel, DR Noguera. Metabolic network analysis reveals microbial community interactions in anammox granules. Nature Communications, DOI: 10.1038/ncomms15416. (May 2017)
• Carr SA, F Schubotz, RB Dunbar, CT Mills, R dias, RE Summons, KW Mandernack. 2017. Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments. ISME Journal, DOI: 10.1038/ismej.2017.150. (October 2017)
• Caron DA, Pe Connell, RA Schaffner, A Schnetzer, JA Fuhrman, PD Countway, DY Kim. 2017. Planktonic food web structure at a coastal timeseriessite: I. Partitioning of microbial abundances and carbon biomass. Deep Sea Research Pt. l: Oceanographic Research Papers. DOI: 10.1016/j.dsr.20l6.l2.Ol3. (January 2017)
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• Bailey A, P De Wit, P Thor, H Browman, RM Bjelland, S Shema, DM Fields, JA Runge, C Thompson, H Hop. 2017. Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to CO2-acidified sea water. Ecology and Evolution, DOI: 10.1002/ece3.3063. (August 2017)
• Wilson W, IC Gilg, M Moniruzzaman, E Field, S Koren, GR LeCleir, J Martinez Martinez, NJ Poulton, BK Swan, R Stepanauskas, S Wilhelm. 2017. Genomic exploration of individual giant ocean viruses. The ISME Journal. DOI: 10.1038/ismej.2017.61. (May 2017)
• Goordial J, I Altshuler, K Hindson, K Chan-Yam, E Marcolefas, LG Whyte. 2017. In situ field sequencing and life detection in remote (79 degrees 26’N) Canadian high arctic permafrost ice microbial communities. Frontiers in Microbiology, V. 8, Article 2594. (December 2017)
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• Smith, HEK, AJ Poulton, R Garley, J Hopkins, LC Lubelczyk, DT Drapeau, S Rauschenberg, BS Twining, NR Bates, WM Balch. 2017. The influence of environmental variability on the biogeography of coccolithophores and diatoms in the Great Calcite Belt. Biogeosciences, V. 14(21), pp. 4905-4925. (November 2017)
• Mordy CW, AH Devol, L Eisner, N Kachel, C Ladd, MW Lomas, P Proctor, RN Sambrotto, SH Shull, PJ Stabeno, E Wisegarver. 2017. Nutrient and phytoplankton dynamics on the inner shelf of the eastern Bering Sea. Journal of Geophysical Research: Oceans, DOI: 10.1002/2016JC012071. (February 2017)
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• Mitchell C, C Hu, B Bowler, D Drapeau, WM Balch. 2017. Estimating particulate inorganic carbon concentrations of the global ocean from ocean color measurements using a reflectance difference approach. Journal of Geophysical Research: Oceans, DOI: 10.1002/2017JC013146. (October 2017)
• Samanipour S, P Dimitriou-Christidis, D Nabi, JS Arey. 2017. Elevated concentrations of 4-Bromobiphenyl and 1,3,5-Tribromobenzene found in deep water of Lake Geneva based on GCxGC-ENCI- TOFMS and GCxGC-uECD. ACS Omega, V. 2(2), pp. 641-652. (February 2017)
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• Hawco NJ, PJ Lam, JM Lee, D Ohnemus, A Noble, NJ Wyatt, MC Lohan, MA Saito. 2017. Cobalt scavenging in the mesopelagic ocean and its influence on global mass balance: synthesizing water column and sedimentary fluxes. Marine Chemistry, DOI: 10.1016/j.marchem,2017.09.001. (September 2017)
• Ohnemus D, PJ Lam, BS Twining. 2017. Optical observation of particles and responses to particle composition in the GEOTRACES GP16 section. Marine Chemistry, DOI: 10.1016/jmarchem.2017.09.004. (September 2017)
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• Ohnemus DC, S Rauschenberg, GA Cutter, JN Fitzsimmons, RM Sherrell, BS Twining. Elevated trace metal content of prokaryotic communities associated with marine oxygen deficient zones. Limnology and Oceanography, V. 62(1), PP. 3-25. (January 2017)
• Brzezinski MA, JW Krause, SB Baines, JL Collier, D Ohnemus. 2017. Patterns and regulation of silicon accumulation in Synechococcus spp. Journal of Phycology, DOI: 10.1111/jpy.12545. (April 2017)
• Noble A, D Ohnemus, NJ Hawco, PJ Lam, MA Saito. 2017. Coastal sources, sinks and strong organic complexation of dissolved cobalt within the US North Atlantic GEOTRACES transect GAO3. Biogeosciences. V. 14(11), pp. 2715-2739. (June 2017)
• Orcutt BN, M Bergenthal, T Freudenthal, D Smith, Md Lilley, L Schneiders, S Green, G L Fruh-Green. 2017. Contamination tracer testing with seabed drills: IODP Expedition 357. Scientific Drilling, V. 23, pp. 39-46. (November 2017)
• Orcutt BN, LL Lapham, J Delaney, N Sarode, KS Marshall, KJ Whaley-Martin, G Slater, CG Wheat, PR Girguis. 2017. Microbial response to oil enrichment in Gulf of Mexico sediment measured using a novel long-term benthic lander system. Elementa Science of the Anthropocene. V. 5, pp. 18+. (April 2017)
• Fruh-Green GL, BN Orcutt, SL Green, C Cotterill, and the Expedition 357 Scientists. 2017. Atlantis Massif serpentinization and life. Expedition 357 of the mission-specific drilling platform from and to Southampton, United Kingdom Sites M0068-M0076, 26 October-11 December 2015. Proceedings of the International Ocean Discovery Program (IODP), V. 357. ( February 2017)
• Orcutt BN, JB Sylvan, CM Santelli. 2017. Recent advances in geomicrobiology of the ocean crust. Frontiers in Microbiology V. 8. (July 2017)
• Pachiadaki MG, E Sintes, K Bergauer, JM Brown, NR record, BK Swan, ME Mathyer, SJ Hallam, P Lopez-Garcia, Y Takaki, T Nunoura, T Woyke, GJ Herndl, R Stepanauskas. 2017. Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science, V. 358, Issue 6366, pp. 1046-1051. (November 2017)
• Suter E, MG Pachiadaki, GT Taylor, YM Astor, V Edgcomb. 2017. Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient: particle-associated microbes in a redox gradient. Environmental Microbiology, DOI: 10.1111/1462-2920.13997. (November 2017)
• Edgcomb V, L Medina, CD Taylor, M Pachiadaki, CA Henriquez-Castillo, O Ulloa. 2017. A review of protest grazing below the photic zone emphasizing studies of oxygen-depleted water columns and recent applications of in situ approaches. Frontiers in Marine Science 4, DOI: 10.3389/fmars.2017.00105. (April 2017)
• Alberti A, J Poulain, S Engelen…..N Poulton, R Stepanauskas……. 2017. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data, V. 4: 170093. (August 2017)
• Dashkova V, D Malashenkov, NJ Poulton, I Vorobjev, NS Barteneva. 2017. Imaging flow cytometry for phytoplankton analysis. Methods, V. 112, pp.188-200. (January 2017)
• Rasher DB, AS Hoey, ME Hay. 2017. Cascading predator effects in a Fijian coral reef ecosystem. Scientific Reports, V. 7(1), Article: 15684. (December 2017)
• Hattenrath-Lehmann TK, RJ Ossiboff, CA Burnell, CD Rauschenberg, K Hynes, RL burke, EM Bunting, K Durham, CJ Gobler. 2017. The role of PSP-producing Alexandrium bloom in an unprecedented diamondback terrapin (Malaclemys terrapin) mortality event in Flanders Bay, New York, USA. Toxicon, V. 129, pp. 36- 43. (April 2017)
• Thomas AC, AJ Pershing, KD Friedland, JA Nye, KE Mills, MA Alexander, NR Record, R Weatherbee, ME Henderson. 2017. Seasonal trends and phenology shifts in sea surface temperature on the North American northeastern continental shelf. Elementa Science of the Anthropocene, V. 5, Article 48. (August 2017)
• Record NR. 2017. A people’s science. Limnology and Oceanography. Bulletin. DOI:10.1002/lob.10171. (March 2017)
• Mori J, JJ Scott, K Hager, CL Moyer, K Kusel, D Emerson. 2017. Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov. sp. Nov. The ISME Journal, DOI: 10.1038/jsmej.2017.132. (August 2017)
• Scott JJ, BT Glazer, D Emerson. 2017. Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lo’ihi Seamount. Environmental Microbiology, V. 19, pp. 301-306. (January 2017)
• Guy-Haim T, H Alexander, TW Bell … K Stamieszkin. 2017. What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol. Environmental Evidence, V. 6(1). (March 2017)
• Ceccarelli D, G Garriss, SY Choi, NA Hasan, R Stepanauskas, M Pop, A Huq, RR Colwell. 2017. Characterization of two cryptic plasmids isolated in Haiti from clinical Vibrio cholera non-01/non-0139. Frontiers in Microbiology, V.8, Article: 2283. (November 2017)
• Bowers RM, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ….. ED Becraft…… 2017. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology, V. 35(8), pp. 725-731. (August 2017)
• Royo-Llonch M, I Ferrera, F MC Castillo, P Sanchez, G Salazar Guiral, R Stepanauskas, JM Gonzalez, M Sieracki, S Speich, L Stemmann, C Pedros-Alio, SG Acinas. 2017. Exploring microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the tropical Indian Ocean via single amplified genomes. Frontiers in Microbiology, V. 8: Article 1317. (July 2017)
• Luo H, Y Huang, R Stepanauskas, J Tang. 2017. Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. Nature Microbiology, (in press) (April 2017)
• Choi J, F Yang, R Stepanauskas, E Cardenas, A Garoutte, R Williams, J Flater, JM Tiedje, KS Hofmockel, B Gelder, A Howe. 2017. Strategies to improve reference databases for soil microbiomes. The ISME Journal, V. 11(4), pp. 829-834. (April 2017)
• Kashtan N, SE Roggensack, JW Berta-Thompson, M Grinberg, R Stepanauskas, SW Chisholm. 2017. Fundamental differences in diversity and genomic proulation structure between Atlantic and Pacific Prochlorococcus. The ISME Journal, DOI: 10.1038/ismeg.2017.64 (May 2017)
• Landry Z, BK Swan, GJ Herndl, R Stepanauskas, SJ Giovannoni. 2017. SAR202 genomes from the dark ocean predict pathways for the oxidation of recalcitrant dissolved organic matter. mBio, V. 8(2): e00413-17. (May 2017)
• Jungbluth SP, TG Del Rio, SG Tringe, R Stepanauskas, MS Rappe. 2017. Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems. PeerJ, V. 5(e3134): pp. 1-22. (May 2017)
• Collingro A, S Kostlbacher, M Mussmann, R Stepanauskas, SJ Hallam, M Horn. 2017. Unexpected genomic features in widespread ingtracellular bacteria: evidence for motility of marine chlamydiae. The ISME Journal. V. 11(10), pp 2334-2344. (October 2017)
• Luo H, Y Huang, R Stepanauskas, J Tang. 2017. Excess of non-conservative amino acid changes in marine bacterioplankton Iineages with reduced genomes. Nature Microbiology, V. 2: Article 17091. (June 2017)
• Garcia SL, SLR Stevens, B Crary, MM Garcia, R Stepanauskas, T Woyke, SG Tringe, SGE Andersson, S Bertilsson, RR Malmstrom, K Mcmahon. 2017. Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations. The ISME Journal, DOI: 10.1038/s41396-017-0001-0.(December 2017)
• Stepanauskas R, EA Fergusson, J Brown, NJ Poulton, B Tupper, JM Labonte, ED Becraft, JM Brown, MG Pachiadaki, T Povilaitis, BP Thompson, CJ Mascena, WK Bellows, A Lubys. 2017. Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles. Nature Communications. V. 8, Article 84. (July 2017)
• Hawley AK, MK Nobu, JJ Wright, WE Durno, C Morgan-Lang, B Sage, P Schwientek, BK Swan, C Rinke, M Torres-Beltran, K Mewis, WT Liu, R Stepanauskas, T Woyke, SJ Hallam. 2017. Nature Communications, V. 8(1), Article: 1507. (December 2017)
• Cohen NR, KA Ellis, RH Lampe, H McNair, BS Twining, MT Maldonado, MA Brzezinski, FI Kuzminov, K Thamatrakoln, CP Till, KW Bruland, WG Sunda, S Bargu, A Marchette. 2017. Diatom transcriptional and phbysiological responses to changes in iron bioavailability across ocean provinces. Frontiers in Marine Science, V. 4, Article 360. (November 2017)
• Saito MA, A Noble, N Hawco, BS Twining, D Ohnemus, SG John, P Lam, TM Conway. 2017. The acceleration of dissolved cobalt’s ecological stoichiometry due to biological uptake, remineralization, and scavenging in the Atlantic Ocean. Biogeosciences, V. 14(20), pp. 4637-4662. (October 2017)
• Boyd PW, MJ Ellwood, A Tagliabue, BS Twining. 2017. Biotic and abiotic retention, recycling and remineralization of metals in the ocean. Nature Geoscience, V. 10(3), pp. 167-173. (March 2017)
• Glass JB, S Chen, KS Dawson, DR Horton, S Vogt, ED Ingall, BS Twining, VJ Orphan. 2017. Trace metal imaging of sulfate-reducing bacteria and methanogenic archaea at single-cell resolution by synchrotron X-ray fluorescence imaging. Geomicrobiology, DOI: 10.1080/01490451.2017.1321068. (April 2017)
• Krause JW, MA Brzezinski, SB Baines, JL Collier, BS Twining, D Ohnemus. 2017. Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea. Global Biogeochemical Cycles, DOI: 10.1002/2017GB005619. (May 2017)

2016

• Bagby SC, CM Reddy, C Aeppli, GB Fisher, D Valentine. 2016. Persistence and biodegradation of oil at the ocean floor flowing Deepwater Horizon. Proceedings of the National Academy of Sciences, Vol. 114 (1), E9-E18. (December 2016)
• Nelson RK, C Aeppli, J Samuel, H Chen, AHB Oliveira, C Eiserbeck...et al. 2016. "Applications of comprehensive two-dimensional gas chromatography (GCxGC) in studying the source, transport, and fate of petroleum hydrocarbons in the environment." In: Standard Handbook of Oil Spill Environmental Forensics: Fingerprinting and source Identification. 2nd ed. Chapter 8, Editors: Scott Stout, Zhendi Wang. Elsevier, pp. 399-448. (January 2016)
• White HK, CH Wang, PL Williams, DM Findley, A Thurston, R Simister, C Aeppli, RK Nelson. 2016. Long-term weathering and continued oxidation of oil residues from the Deepwater Horizon spill. Marine Pollution Bulletin, DOI: 10.1016/j.marpolbul.20l6.lO.029. (October 2016)
• Randolph K, HM Dierssen, A Cifuentes-Lorenzen, WM Balch, EC Monahan, CJ Zappa, DT Drapeau, Bowler. 2016. Novel methods for optically measuring whitecaps under natural wave breaking conditions in the Southern Ocean. Journal of Atmospheric and Oceanic Technology, DOI: 10.1175/JTECH-D-16-0086-1. (December 2016)
• Balch WM, T Huntington, G Aiken, D Drapeau, B Bowler, L Lubelczyk, K Butler. 2016. Toward a quantitative and empirical dissolved organic carbon budget for the Gulf of Maine, a semienclosed shelf sea. Global Biogeochemical Cycles, V. 30, pp. 268-292. (February 2016)
• Valente A, S Sathyendranath, V Brotas........WM Balch. 2016. A compilation of global bio-optical in situ data for ocean-colour satellite applications. Earth Systems Science Data Discussions. V. 8(1), pp. 235-252. (June 2015)
• Maranon E, WM Balch, P Cermeno, N gonzalez, C Sobrino, A Fernandez, M Huete-Ortega, DC Lopez-Sandoval, M Delgado, M Estrada, M alvarez, E Fernandez-Gaullart, C Pelejero. 2016. Coccolithophore calcification is independent of carbonate chemistry in the tropical ocean. Limnology and Oceanography, V. 61(4), pp. 1345-1357. (May 2016)
• Valente A, S Sathyendranath, V Broptas, S Groom, M Grant, M Taberner, D Antoine, R Arnone, WM Balch, et al. 2016. A compilation of global bio-optical in situ data for ocean-colour satellite applications. Earth System Science Data, V. 8, pp. 238-252. (June 2016)
• Balch WM, NR Bates, PJ Lam, S Rauschenberg. 2016. Factors regulating the Great Calcite Belt in the Southern Ocean and its biogeochemical significance: regulation of the Great Calcite Belt. Global Biogeochemical Cycles, DOI: 10.1002/2016GB005414. (June 2016)
• Huntington TG, WM Balch, GR Aiken, P Camill. 2016. Climate change and dissolved organic carbon export to the Gulf of Maine. Journal of Geophysical Research: Biogeosciences, DOI: 10.1002/2015.JGOO3314. (September 2016)
• Ramirez GA, CL Hoffman, MD Lee, RA Lesniewski, RA Barco, A Karber, BM Toner, CG Wheat, KJ Edwards, BN Orcutt. 2016. Assessing marine microbial induced corrosion at Santa Catalina Island, California. 2016. Frontiers in Microbiology, V. 7, Article 1679. (October 2016)
• Beam JP, HC Bernstein, ZJ Jay, MA Kozubal, RM Jennings, SG Tringe, WP Inskeep. 2016. Assembly and succession of iron oxide microbial mat communities in acidic geothermal springs. Frontiers in Microbiology, V. 7: Article 25. (February 2016)
• Jay ZJ, J Beam, MA Kozubal, R dM Jennings, DB Rusch, WP Inskeep. 2016. The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park. Environmental Microbiology, DOI: 10.1111/1462-2920.13366. (April 2016)
• Melendrez MC, ED Becraft, JM Wood, MT Olsen, BA Bryant, JF Heidelberg, DB Rusch, FM cohan, DM Ward. 2016. Recombination does not hinder formation or detection of ecological species of Synechococcus inhabiting a hot spring cyanobacterial mat. Frontiers in Microbiology, V. 6: Article 1540. (January 2016)
• Becraft ED, JA Dodsworth, SK Murugapiran, I Ohlsson, BR Briggs, J Kanbar, I DeVlaminck, SR Quake, H Dong, bP Hedlund, WD Swingley. 2016. Single-cell-genomics-facilitated read binning of candidate phylum EM19 genomes from geothermal spring metagenomes. Applied and Environmental Microbiology, V. 82(4), pp. 992-1003. (April 2016)
• Cold ER, NJ Freyria, J Martinez Martinez, JA Fernandez Robledo. 2016. An agar-based method for plating marine protozoan parasites of the genus Perkinsus. PLoS ONE, V. 11(5), pp. 1-12. (May 2016)
• Cold ER , GR Vasta, JA Fernandez Robledo. 2016. Transient expression of Plasmodium berghei MSP8 and HAP2 in the marine protozoan parasite Perkinsus marinus. Journal of Parasitology, DOI: 10.1645/16-88. (October 2016)
• Enochs IC, DP Manzello, A Tribollet, L Valentino, G Kolodziej, EM Donham, MD Fitchett, R Carlton, NN Price.2016. Elevated colonization of microborers at a volcanically acidified coral reef. PLoS ONE, V. 11(7), Article number: e0159818. (July 2016)
• Takeshita Y, W McGillis, EM Briggs, AL Carter, EM Donham, TR Martz, NN Price, JE Smith. 2016. Assessment of net community production and calcification of a coral reef using a boundary layer approach. Journal of Geophysical Research: Oceans, V. 121(8), pp. 5655-5671. (August 2016)
• Emerson D. 2016. The Irony of iron- biogenic iron oxides as an iron source to the ocean. Frontiers in Microbiology, V. 6: Article 1502. (January 2016)
• Henri P, C Rommevaux-Jestin, A Godfroy, F Lesongeur, A Mumford, D Emerson, B Menez. 2016. Structural iron(II) of basaltic glass as an energy source for Zetaproteobacteria in an abyssal plain environment off the Mid-Atlantic Ridge. Frontiers in Microbiology, V. 6:Article 1518. (January 2016)
• Emerson D, C Lydell. 2016. Inventory of cultivatable populations of S-cycling, dermentative, Fe-reducing, and aerobic heterotrophic bacteria from saltmarsh sediments. bioRxiv, DOI: http://dx.doi.org/10.1101/048611. (April 2016)
• McBeth JM, D Emerson. 2016. In situ microbial community succession on mild steel in estuarine and marine environments: exploring the role of iron-oxidizing bacteria.l Frontiers in Microbiology, V. 7: Article 767. (May2016)
• Chan CS, SM McAllister, AH Leavitt, BT Glazer, D Emerson. 2016. The architecture of iron microbial mats reflects the adaptation of chemolithotrophic iron oxidation in freshwater and marine environments. Frontiers in Microbiology, V. 7:Article 796. (June 2016)
• Chan CS, D Emerson, GW Luther III. 2016. The role of microaerophilic Fe-oxidizing microorganisms in producing banded iron formation. Geobiology. V. 14(5), pp. 509-528 (July 2016)
• Mumford A, IJ Adaktylou, D Emerson. 2016. Peeking under the Iron Curtain: development of a microcosm for imaging colonization of steel surfaces by Mariprofundus sp. DIS-1, an oxygen tolerant Fe-oxidizing bacterium. Applied and Environmental Microbiology, DOI: 10.1128/AEM.01990-16. (September 2016)
• Van Voorhis WC, JA Fernandez Robledo, YA Resto, et al. 2016. Open source drug discovery with the malaria box compound collection for neglected diseases and beyond. PLoS Pathogens, V. 12(7): e1005763. (July 2016)
• Zarubin M, Y Lindemann, O Brunner, DM Fields, HI Browman, A Genin. 2016. The effect of hydrostatic pressure on grazing in three calanoid copepods. Journal of Plankton Research, V. , pp. 1-8. (January 2016)
• Runge JA, DM Fields, CRS Thompson, SD Shema, RM Bjelland, CMF Durif, AB Skiftesvik, HI Browman. 2016. End of the century CO2 concentrations do not have a negative effect on vital rates of Calanus finmarchicus, an ecologically critical planktonic species in North Atlantic ecosystems. ICES Journal of Marine Science, V. pp.  (January 2016)
• Bailey A, P Thor, H Browman, DM Fields, JA Runge, A Vermont, RM Bjelland, C Thompson, S Shema, C Durif, H Hop. 2016. Early life stages of the Arctic copepod Calanus glacialis are unaffected by increased seawater pCO2. ICES Journal of Marine Science, DOI: 10.1093/icesjms/fsw066. (April 2016)
• Waller JD, RA Wahle, H McVeigh, DM Fields. 2016. Linking rising pCO2 and temperature to the larval development and physiology of the American lobster (Homarus americanus). ICES Journal of Marine Science, DOI: 10.1093/icesjms/fswl54. (September 2016)
• Gilg IC, SD Archer, SA Floge, DM Fields, AI Vermont, AH Leavitt, WH Wilson, J Martinez Martinez. 2016. Differential gene expression is tied to photochemical efficency reduction in virally infected Emiliania huxleyi. Marine Ecology Progress Series, V. 555, pp. 13-27. (August 2016)
• Chan CS, SM McAllister, AH Leavitt, BT Glazer, ST Krepski, D Emerson. 2016. The architecture of iron microbial mats reflects the adaptation of chemolithotrophic iron oxidation in freshwater and marine environments. Frontiers in Microbiology, V. 7: Article 796. (June 2016)
• Lee YJ,PA Matrai, MAM Friedrichs, VS Saba, O Aumont, M Babi, et al. 2016. Net primary productivity estimates and environmental variables in the Arctic Ocean: an assessment of coupled physical-biogeochemical models. Journal of Geophysical Research: Oceans, DOI: 10.1002/2016.JC011993. (November 2016)
• Li M, YJ Lee, JM Testa, Y Li, W Ni, WM Kemp, DM Di Toro. 2016. What drives interannual variability of hypoxia in Chesapeake Bay: climate forcing versus nutrient loading? Geophysical Research Letters, V. 43(5), pp. 2127-2134.(March 2016)
• Jin M, EE Popova, J Zhang, R Ji, D Pendleton, O Varpe, A Yool, YJ Lee. 2016. Ecosystem model intercomparison of under-ice and total primary productioln in the Arctic Ocean. Journal of Geophysical Research: Oceans, V. 121(1), pp. 934-948. (January 2016)
• Sigler MF, JM Napp, RJ Stabeno, RA Heintz, ML Lomas, GL Hunt. 2016. Variation in annual production of copepods, euphausiids, and juvenile walleye pollock in the southeastern Bering Sea. Deep-Sea Research Pt. II: Topical Studies in Oceanography, DOI: 10.1016/j.dsr2.2016.01.003. (January 2016)
• Montes E, FE Muller-Karger, A Cianca, MW Lomas, L Lorenzoni, S Habtes. 2016. Decadal variability in the oxygen inventory of North Atlantic subtropical underwater captured by sustained, long-term oceanographic time-series observations. Global Biogeochemical Cycles, V. 30, pp. 460-478 (January 2016)
• Tin HC, MW Lomas, J Ishizaka. 2016. Satellite-derived estimates of primary production during the Sargasso Sea winter/spring bloom: integration of in-situ time-series data and ocean color remote sensing observations. Regional Studies in Marine Science, V. 3, pp. 131-143. (January 2016)
• Banas NS, J Zhang, RG Campbell, NR Sambrotto, MW Lomas, E Sherr, B Sherr, C Ashjian, D Stoecker, EJ Lessard. 2016. Spring planktondynamics in the Eastern Bering Sea, 1971-2050: mechanisms of interannual variability diagnosed with a numberical model. Journal of Geophysical Research: Oceans, V. 121(2), pp. 1476-1501. (February 2016)
• Cotti-Rausch BE, MW Lomas, EM Lachenmyer, EA Goldman, DW Bell, SR Goldberg, TL Richardson. 2016. Mesoscale and sub-mesoscale variability in phytoplankton community composition in the Sargasso Sea. Deep-Sea Research Pt.I: Oceanographic Research Papers, V. 110, pp. 106-122. (April 2016)
• Montes E, F Muller-Karger, MW Lomas, A Cianca, L Lorenzoni, S Habtes. 2016. Decadal variability in the oxygen inventory of North Atlantic subtropical underwater captured by sustained, long-term oceanographic time-series observations. Global Biogeochemical Cycles, V. 30(3), pp. 460-478. (March 2016)
• Hoang TC, AJ Cole, RK Fotedar, MJ O'Leary, MW Lomas, S Roy. 2016. Seasonal changes in water quality and Sargassum biomass in southwest Australia. Marine Ecology Progress Series V. 551, pp. 63-79. (June 2016)
• Liu CL, L Zhai, SI Zeeman, L Eisner, JC Gann, CW Mordy, SB Moran, MW Lomas. 2016. Seasonal and geographic variations in modeled primary production and phytoplankton losses from the mixed layer between warm and cold years on the eastern Bering Sea shelf. Deep-Sea Research Pt.I: Topical Studies in Oceanography, DOI: 10.1016/j.dsr2.2016.07.008. (July 2016)
• Van Pelt, JM Napp, CJ Ashjian, HR Harvey, MW Lomas, MF Sigler, PJ Stabeno. 2016. An introduction and overview of the Bering Sea Project: Volume IV. Deep-Sea Research PT II: Topical Studies in Oceanography, DOI: 10.1016/j.dsr2.20l6.09/002. (September 2016)
• Vermont AI, J Martinez Martinez, JD Waller, IC Gilg, AH Leavitt, SA Floge, SD Archer, WH Wilson, DM Fields. 2016. Virus infection of Emiliania huxleyi deters grazing by the copepod Acartia tonsa. Journal of Plankton Research, DOI: 10.1093/plankt/fbw064. (September 2016)
• NA Murray, JM Muratli, AM Hartwell, H Manners, MR Megowan, M Goni, M Palmer, J McManus. 2016. Data report: dissolved minor element compositions, sediment major and minor element concentrations, and reactive iron and manganese data from the Lesser Antilles volcanic arc region, IODP Expedition 340 Sites U1394, U1395, U1396, U1399, and U1400. In: Le Friant, A. Ishizuka, O, Stroncik, NA, and the Expedition 340 Scientists. Proceedings of the Integrated Ocean Drilling Program, V. 340. (November 2016)
• Mitchell C, A Cunningham, D McKee. 2016. Derivation of the specific optical properties of suspended mineral particles and their contribution to the attenuation of solar irradiance in offshore waters by ocean color remote sensing. Journal of Geophysical Research: Oceans, V. 121, pp. 104-117. (January 2016)
• NJ Hawco, DC Ohnemus, JA Resing, BS Twining, MA Saito. 2016. A dissolved cobalt plume in the oxygen minimum zone of the Eastern Tropical South Pacific. Biogeosciences Discussions, DOI: 10.5194/bg-2016-169. (May 2016)
• Anderson RF, H Cheng, RL Edwards, MQ Fleisher, CT Hayes, K-F Huang, D Kadko, PJ Lam, WM Landing, Y Lao, YLu, CI Measures, SB Moran, PL Morton, DC Ohnemus, LF Robinson, RU Shelley. 2016. How well can we quantify dust deposition to the ocean ? Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. V. 374(2081) Article no.: 20150285. (November 2016)
• A Noble, D Ohnemus, NJ Hawco, PJ Lam, MA Saito. Coastal sources, sinks and strong organic complexation of dissolved cobalt within the US North Atlantic GEOTRACES transect GA03. Biogeosciences Discussions, DOI: 10.5194/bg-2016- 512. (December 2016)
• Hatta M, CI Measures, PJ Lam, D Ohnemus, M Auro, MM Grand, KE Selph. 2016. The relative roles of modified circumpolar deep water and benthic sources in supplying iron to the recurrent phytoplankton blooms above Pennell and Mawson Banks, Ross Sea, Antarctica. Journal of Marine Systems, DOI: 10.1016/j.jmarsys.2016.07.009. (June 2016)
• Ohnemus DC, S Rauschenberg, W Krause, MA Brzezinski, JL Collier, S Geraci-Yee, SB Baines, BS Twining. 2016. Silicon content of individual cells of Synechococcus from the North Atlantic Ocean. Marine Chemistry, DOI: 10.1016/j.marchem.20l6.lO.003. (October 2016)
• Baquiran JPM, GA Ramirez, AG Haddad, BM Toner, S Hulme, CG Wheat, KJ Edwards, BN Orcutt. 2016. Temperature and redox effect on mineral colonization in Juan de Fuca Ridge flank subsurface crustal fluids. Frontiers in Microbiology, V. 7, Article: 396. (March 2016)
• Fruh-Green GL, BN Orcutt, S Green, C Cotterill, and the Expedition 357 Scientists. 2016. Expedition 357 Preliminary Report: Atlantic Massif Serpentinization and Life. International Ocean Discovery Program. DX.DOI.org/10.14379/iodp.pr.357.2016. (May 2016)
• Zhang X, J Fang, W Bach, KJ Edwards, BN Orcutt, F Wang. 2016. Nitrogen stimulates the growth of subsurface basalt-associated microorganisms at the western flank of the Mid-Atlantic Ridge. Frontiers in Microbiology, V. 7, Article 633. (May 2016)
• Edgcomb V, MG Pachiadaki, M Paraskevi, J Bernhard. 2016. Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basins. The ISME Journal, DOI: 10.1038/ismej.2016.58. (April 2016)
• Pachiadaki MG, V Redou, DJ Beaudoin, G Burgaud, VP Edgcomb. 2016. Fungal and projaryotic activities in the marine subsurface biosphere at Peru Margin and Canterbury Basin inferredfrom RNA-based analyses and microscopy. Frontiers in Microbiology, V. 7: Article 846. (June 2016)
• Cetinic I, NJ Poulton, WH Slade. 2016. Characterizing the phytoplankton soup: pump and plumbing effects on the particle assemblage in underway optical seawater systems. Optics Express 20703, V. 24(18). (September 2016)
• Kram SL, NN Price, EM Donham, MD Johnson, ELA Kelly, SL Hamilton, JE Smith. 2016. Variable responses of temperate calcified and fleshy macroalgae to elevated pCO2 and warming. ICES Journal of Marine Science, V. 74(3), pp. 693-703. (June 2016)
• Ji R, Z Feng, BT Jones, C Thompson, C Chen, NR Record, JA Runge. Coastal amplification of supply and transport (CAST): a new hypothesis about the persistence of Calanus finmarchicus in the Gulf of Maine. ICES Journal of Marine Science (Accepted) (December 2016)
• Record NR, D Talmy, S Vage. 2016. Quantifying tradeoffs for marine viruses. Frontiers in Marine Science V. 3, pp. 251. (December 2016)
• Record NR, JD O’Brien, K Stamieszkin, RJ Runge. 2016. Omic-style statistical clustering reveals old and new patterns in the Gulf of Maine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences, DOI: 10.1139/cjfas-2016-01521. (November 2016)
• Friedland KD, NR Record, RG Asch, T Kristiansen, VS Saba, KF Drinkwater, S Henson, RT Leaf, RE Morse, DG Johns, SI Large, SS Hjollo, JA Nye, MA Alexander, R Ji. 2016. Seasonal phytoplankton blooms in the North Atlantic linked to the overwintering strategies of copepods. Elementa, DOI: 10.12952/journal.elementa.000099. (April 2016)
• Pershing AJ, MA Alexander, CM Hernandez, LA Kerr, AL Mills, JA Nye, NR Record, HA Scannell, JD Scott, GD Sherwood, AC Thomas. 2016. Reponse to comments on "Slow Adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery" Science, V. 352 (6284), pp. 423. (April 2016)
• Phillips BT, M Dunbabin, B Henning, C Howell, A DeCiccio, A Flinders, KAKelley, JJ Scott, S Albert, S Carey, R Tsadok, A Grinham. 2016. Exploring the "Sharkcano": biogeochemical observations of the Kavachi submarine volcano (solomon lslands). oceanography, V. 29(4), pp. 160-169. (December 2016)
• Scott JJ, B Glazer, D Emerson. 2016. Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lo’ihi Seamount. Environmental Microbiology, DOI: 10.1111/1462-2920.13607 (November 2016)
• Choi J, F Yang, R Stepanauskas, E Cardenas, A Garoutte, R Williams, J Flater, JM Tiedje, KS Hofmockel, B Gelder, A Howe. 2016. Strategies to improve reference databases for soil microbiomes. The ISME Journal, DOI: 10.1038/ismej.20l6.l68. (December 2016 )
• Zhang Y, Sun Y, N Jiao, R Stepanauskas, H Luo. 2016. Ecological genomics of the uncultivated marine roseobacter lineage CHAB-I-5. Applied and Environmental Microbiology, V. 82(7), pp. 2100-2111. (April 2016)
• Wasmund K, M Cooper, L Schreiber, KG Lloyd, BJ Baker, DG Petersen, BB Jorgensen, R Stepanauskas, R Reinhardt, A Schramm, A Loy, L Adrian. 2016. Single-cell genome and group-specific dsrAB sequencing implicate marine members of the Class Dehalococoidia (:Phylum Chloroflexi) in sulfur cycling. mBio, V. 7(3):e00266-16.(June 2016)
• Dyksma S, K Bischof, BM Fuchs, K Hoffmann, D Meier, DAMeyerdierks, P Pjevac, D Probandt, M Richter R Stepanauskas R , M Musmann. 2016. Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME Journal, V. 10(8), pp. 1939-1953. (August 2016)
• Eiler A, R Mondav, L Sinclair, L Fernandez-Vidal, DG Scofield, P Schwientek, M Martinez-Garcia, D Torrents, KD McMahon, SGE Andersson, R Stepanauskas, T Woyke, T Bertilsson. 2016. Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME Journal, V. 10(8), pp. 1902-1914. (August 2016)
• Saito MA, A Noble, N Hawco, BS Twining, D Ohnemus, SG John, P Lam, TM Conway, R Johnson, DM Moran, M Mcilvin. 2016. The acceleration of dissolved cobalt’s ecological stoichiometry due to biological uptake, remineralization, and scavenging in the Atlantic Ocean. Biogeosciences Discussions, DOI: 10.5194/bg-2016- 511. (November 2016)
• Baines SB, Chen X, Vogt S, Fisher NS, Twining BS, Landry MR. 2016. Microplankton trace element contents: implications for mineral limitation of mesozooplankton in an HNLC area. Journal of Plankton Research, V. 38(2), pp. 256-270. (January 2016)
• Whitney LP, MW Lomas. 2016. Growth on ATP elicits a P-stress response in the picoeukarote Micromonas pusilla. PLoS One, V. 11(5), pp. 1-18. (May 2016)
• Mccluskey K, A Alvarez, AR Bennett, D Bokati.......SW Yentsch. 2016. The US Culture Collection Network lays the foundation for progress in preservation of valuable microbial resources. Phytopathy, DOI: 10.1094/PHYTO-02-16-0074-RVW. (March 2016)

2015

• Koolen HHF, RF Swarthout, RK Nelson, H Chen, LC Krajewski, C Aeppli, AM McKenna, RP Rodgers, CM Reddy. 2015. Unprecedented insights into the chemical complexity of coal tar from comprehensive two-dimensional gas chromatography mass spectrometry and direct infusion Fourier transform ion cyclotron resonance mass spectrometry. Energy & Fuels, V. 29(2), pp. 641-648. (January 2015)
• Drozd GT, DR Worton, C Aeppli, CM Reddy, H Zhang, E Variano, AH Goldstein. 2015. Modeling comprehensive chemical composition of weathered oil following a marine spill to predict ozone and potential secondary aerosol formation and constrain transport pathways. Journal of Geophysical Research: Oceans. DOI: 10.1002/2015JC011093. (October 2015)
• Andersson AJ, DI Kline, PJ Edmunds, SD Archer, N Bednarsek, RC Carpenter, M Chadsey, P Goldstein, AG Grottoli, TP Hurst, AL King, JE Kubler, IB Kuffner, KRM Mackey, BA Menge, A Patan, U Riebesell, A Schnetzer, ME Warner, RC Zimmerman. 2015. Understanding ocean acidification impacts on organismal to ecological scales. Oceanography, V. 28(2), pp. 16-27. (June 2015)
• Finke N, SE Baer, JP Chanton, M Saxton, SB Joye. 2015. Methane production in sea ice. Geophysical Research Letters. (in review)
• Baer SE, TL Connelly, DA Bronk. 2015. Nitrogen uptake dynamics in landfast sea ice of the Chukchi Sea. Polar Biology, V. 38, pp. 781-797. (January 2015)
• Singh A, SE Baer, U Riebesell, AC Martiny, MW Lomas. 2015. C:N:P stoichiometry at the Bermuda Atlantic Time-series Study station in the North Atlantic Ocean. Biogeosciences, V. 12, pp. 6389-6403. (November 2015)
• Rosengard SZ, PJ Lam, WM Balch, ME Auro, S Pike, D Drapeau, B Bowler. 2015. Carbon export and transfer to depth across the Southern Ocean Great Calcite Belt. Biogeosciences Discussions, V. 12(3), pp. 2843-2896. (January 2015)
• Salisbury J, D Vandemark, B Jonsson, WM Balch, S Chakraborty, S Lohrenz, B Chapron, B Hales, A Mannino, JT Mathis, N Reul, SR Signorini, R Wanninkhof, KK Yates. 2015. How can present and future satellite missions  support scientific studies that address ocean acidification? Oceanography, V. 28(2), pp. 108-121. (June 2015)
• Rivero-Calle S, A Gnanadesikan, CE Del Castillo, WM Balch, SD Guikema. 2015. Miltidecadal increase in North Atlantic coccolithophores and the potential role of rising CO2. Science, V.350 (6267), pp. 1533-1537. (November 2015)
• Balch WM, T Huntington, G Aiken, K Butler. 2015. Towards a quantitative and empirical dissolved organic carbon budget for the Gulf of Maine, a semi-enclosed shelf sea. Global Biogeochemical Cycles. DOI: 10.1002/2015GB005332. (December 2015)
• Becraft ED, JM Wood, DB Rusch, M Kuhl, SI Jensen, DA Bryant, DW Roberts, FM Cohan, DM Ward. 2015. The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone Park. Frontiers in Microbiology, V. 6, Article 590. (June 2015)
• Nowack S, MT Olsen, GA Schaible, ED Becraft, G Shen, I Klapper, DA Bryant, DM Ward. 2015. The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light. Frontiers in Microbiology, V. 6, Article 626. (June 2015)
• Olsen MT, S Nowack, JM Wood, ED Becraft, K LaButti, A Lipsen, J Martin, WS Schackwitz, DB Rusch, FM Cohan, DA Bryant, DM Ward. 2015. The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat. Frontiers in Microbiology, V. 6, Article 604. (June 2015)
• Young-Mo K. S Nowack, MT Olsen, ED Becraft, JM Wood, V Thiel, I Klapper, M Kuhl, JK Fredrickson, DA Bryant, DM Ward, TO Metz. 2015. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Frontiers in Microbiology, V. 6, Article 209. (June 2015)
• Melendrez MC, ED Becraft, JM Wood, MT Olsen, DA Bryant, JF Heidelberg, DB Rusch, FM Cohan, DM Ward. 2015. Recombination does not hinder formation or detection of ecological species of Synechococcus inhabiting a hot spring cyanobacterial mat. Frontiers in Microbiology, V. 6: Article 1540. (December 2015)
• Hu, SK, Z Liu, AAAY, PD Countway, DY Kim, AC Jones. 2015. Estimating protistan diversity using high-throughput sequencing. Journal of Eukaryotic Microbiology, DOI: 10.1111/jeu.12217 (April 2015)
• Emerson D & De Vet W. 2015. The role of FeOB in engineered water ecosystems: a review. Journal of the American Water Works Association. V. 107, pp.   (January 2015)
• Barco RA, D Emerson, JB Sylvan, BN Orcutt, MEJ Meyers, GA Ramirez, JD Zhong, KJ Edwards. 2015. New insight into microbial iron oxidation as revealed by the proteomic profile of an obligate iron-oxidizing chemolithoautotroph. Applied and Environmental Microbiology, V. 81(17), pp. 5927-5937. (September 2015)
• Kappler A, D Emerson, J Grainick, EM Muehe. 2015. "Geomicrobiology of Iron" In: Ehrlich's Geomicrobiology, 6th Edition (HL Erhlich, DK Newman, A Kappler, Editors), CRC Press, pp. 343-399. (October 2015)
• Emerson D, J Scott, J Benes, W Bowden. 2015. Microbial iron oxidation in the Arctic tundra and the implications for biogeochemical cycling. Applied & Environmental Microbiology, V. 81(23), pp. 8066-8075. (December 2015)
• Henri P, C Rommevaux-Jestin, F Lesongeur, A Mumford, D Emerson, A Godfroy, B Menez. 2015. Structural iron (II) of basaltic glass as an energy source for Zetaproteobacteria in an abyssal plain environment, off the Mid Atlantic Ridge. Frontiers in Microbiology, V. 6, Article 1518. (December 2015)
• Cunningham C, JA Fernandez Robledo. 2015. Molluscan immunology. Fish & Shellfish Immunology. V. (June 2015)
• Munson-McGee JH, E Field, M Bateson, C Rooney, R Stepanauskas, MJ YOung. 2015. Nanoarchaeota, its sulfolobales host, and Nanoarchaeota virus distribution across Yellowstone National Park hot springs. Applied and Environmental Microbiology, V.   pp.    (September 2015)
• Durif CMF, DM Fields, HI Browman, SD Shema, JR Enoae, AB Skiftesvik, R Bjelland, R Sommaruga, MT Arts. 2015. UV radiation changes algal stoichiometry, but does not have cascading effects on a marine food chain. Journal of Plankton Research, V.  (October 2015)
• Myers-Smith IH, SC Elmendorf, PSA Beck, M Wilmking, M Hallinger, D blok, KD Tape.........KC Guay. 2015. Climate sensitivity of shrub growth across the tundra biome. Nature Climate Change, DOI: 10.1038/nclimate2697. (July 2015)
• Fanning, KA, RT Masserini, J Walsh, R Wanninkhof, K Sullivan, JI Virmani, CA Heil. 2015. An ammonium enrichment event in the surface ocean: wind forcing and potential ramifications. Marine Chemistry, V. 174, pp. 26-34. (March 2015)
• Hopkins J, SA Henson, SC Painter, T Tyrrell, AJ Poulton. 2015. Phenological characteristics of global coccolithophore blooms. Global Biogeochemical Cycles, DOI: 10.1002/2014GB004919. (January 2015)
• Jacquot JE, JW Moffett. 2015. Copper distribution and speciation across the internatioanl GEOTRACES section GA03. Deep-Sea Research II: Topical Studies in Oceanography, (in press)
• Labonte JM, BK Swan, B Poulos, H Luo, S Koren, SJ Hallam, MB Sullivan, T Woyke, KE Wommack, R Stepanauskas. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. 2015. The ISME Journal, V. pp. 1-14. (February 2015)
• Labonte JM, EK field, M Lau, D Chivian, E van Heerden, KE Wommack, TL Kieft, TC Onstott, R Stepanauskas. 2015. Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population. Frontiers in Microbiology, DOI: 10.3389/fmicb.2015.00349. (April 2015)
• Labonte JM, SJ Hallam, CA Suttle. 2015. Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment. Frontiers in Microbiology, V. 6, article 315. (April 2015)
• Gillett DJ, SB Weisberg, T Grayson, A Hamilton, V Hansen, EW Leppo, MC Pelletier, A Borja, D Cadien, D Dauer, R Diaz, M Dutch, JL Hyland, M Kellogg, PF Larsen, JS Levinton, R Llanso, LL Lovell, PA Montagna, D Pasko, CA Phillips, C Rakocinski, JA Ranasinghe, DM Sanger, H Teixeira, RF Van Dolah, RG Velarde, KI Welch. 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators, V. 50, pp. 99-107. (March 2015)
• Lee YJ, PA Matrai, MAM Friedrichs, VS Saba, D Antoine, M Ardyna, I Asanuma, M Babin, S Belanger. 2015. An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll-a-based models. Journal of Geophysical Research: Oceans V.120(9), pp. 6508-6541. (September 2015)
• Kretz CB, DW Bell, DA Lomas, MW Lomas, AC Martiny. 2015. Influence of growth rate on the physiological response of marine Synechococcus to phosphate limitation. Frontiers in Microbiology. DOI: 10.3389/fmicb 2015 00085. (February 2015)
• Fawcett SE, BB Ward, MW Lomas, DM Sigman. 2015. Vertical decoupling of nitrate assimilation and nitrification in the Sargasso Sea. Deep-Sea Research Part I: Oceanographic Research Papers, V.103, pp. 64-72 (May 2015)
• Mackinson BL, SB Moran, MW Lomas, GM Stewart, RP Kelly. 2015. Estimates of micro-,nano, and picoplankton contributions to particle export in the northeast Pacific. Biogeosciences, V. 12, pp. 3429-3446. (June 2015)
• Estapa ML, DA Siegel, KO Buesseler, RHR Stanley, MW Lomas, NB Nelson. 2016. Decoupling of net community and export production on submesoscales in the Sargasso Sea. Global Biogeochemical Cycles, V. 29, pp. 1266-1282. (July 2015)
• Campbell RG, CJ Ashjian, EB Shen, BF Sherr, , MW Lomas, C Ross, P Alatalo, C Gelfman, D Van Keuren. 2015. Mesozooplankton grazing during spring sea-ice conditions in the eastern Bering Sea. Deep Sea Research Pt.II: Topical Studies in Oceanography. DOI: 10.1016/j.dsr2.2015.11.003. (November 2015)
• Martinez Martinez J, A Boere, I Gilg, JWM van Lent, HJ Witte, JDL van Bleijswijk, CPD Brussard. 2015. New lipid envelope-containing dsDNA virus isolates infecting Micromonas pusilla reveal a separate phylogenetic group. Aquatic Microbial Ecology, V. 74, pp. 17-28. (January 2015)
• Marquis ND, NR Record, JA Fernandez Robledo. 2015. Survey for protozoan parasites in Eastern oysters (Crassostrea virginica) from the Gulf of Maine using PCR-based assays. Parasitology International, V. 64, pp. 299-302. (April 2015)
• Tremblay JE, LG Anderson, P Matrai, P Coupel, S Belanger, C Michel, M Reigstad. 2015. Global and regional drivers of nutrient supply, primary production and CO2 drawdown in the changing Arctic Ocean. Progress in Oceanography, V. 139, pp. 171-196. (September 2015)
• Mitchell C, A Cunningham, D McKee. 2015. Derivation of the specific optical properties of suspended mineral particles and their contribution to the attenuation of solar irradiance in offshore waters by ocean color remote sensing. Journal of Geophysical Research: Oceans. V. pp. (November 2015)
• Hayes CT, RF Anderson, MQ Fleisher, SM Vivancos, PJ Lam, DC Ohnemus, KF Huang, LF Robinson, Y Lu, H Cheng, RL Edwards, SB Moran. 2015. Intensity of Th and Pa scavenging partitioned by particle chemistry in the North Atlantic Ocean. Marine Chemistry, DOI: 10.1016/j.marchem.2015.01.006. (February 2015)
• Ohnemus DC, PJ Lam. 2015. Cycling of lithogenic marine particles in the US GEOTRACES North Atlantic transect. Deep-Sea Research II: Topical Studies in Oceanography, V. 116, pp. 283-302. (June 2015)
• Revels BN, DC Ohnemus, PJ Lam, TM Conway, SG John. 2015. The isotopic signature and distribution of particulate iron in the North Atlantic Ocean. Deep-Sea Research II, V.116, pp. 321-331. (June 2015)
• Lam PJ, DC Ohnemus, ME Auro. 2015. Size-fractionated major particle composition and concentrations from the US Geotraces North Atlantic Zonal Transect. Deep-Sea Research Pt. II: Topical Studies in Oceanography, V. 116, pp. 303-320. (June 2015)
• Noble AE, Y Echegoyen-Sanz, EA Boyle, DC Ohnemus, PJ Lam, R Kayser, M Reuer, J Wu, W Smethie. 2015. Dynamic variability of dissolved Pb and Pb isotope composition from the U.S. North Atlantic GEOTRACES transect. Deep-Sea Research II: Topical Studies in Oceanography, V. 116, pp. 208-225. (June 2015)
• Orcutt BN. 2015. Biological oceanography: life in the deepest depths. Nature Geoscience/News and Views. Doi: 10.1038/NGEO2378. (March 2015)
• Carr SA, BN Orcutt, KW Mandernack, JR Spear. 2015. Abundant atribacteria in deep marine sediment from the Adelie Basin, Antarctica. Frontiers in Microbiology, DOI: 10.3389/fmicfb.2015.00872. (August 2015)
• Orcutt BN, JB Sylvan, DR Rogers, J Delaney, RW Lee, PR Girguis. 2015. Carbon fixation by basalt-hosted microbial communities. Frontiers in Microbiology, V. 6 Article 904. (September 2015)
• Lee MD, Walworth NG, Sylvan JB, Edwards KJ, Orcutt BN. 2015. Microbial communities on seafloor basalts at Dorado Outcrop reflect level of alteration and highlight global lithic clades. Frontiers in Microbiology, V. 6 Article 1470. (December 2015)
• Kormas KA, MG Pachiadaki, H Karayanni, ER Leadbetter, JM Bernhard, VP Edgecomb. 2015. Inter-comparison of the potentially active prokaryotic communities in the halocline sediments of Mediterranean deep-sea hypersaline basins. Extremophiles, DOI: 10.1007/s00792-015-0770-1. (July 2015)
• Panek T, P Taborsky, MG Pachiadaki, M Hroudova, C Vicek, VP Edgcomb, I Cepicka. 2015. Combined culture-based and culture-independent approaches provide insights into diversity of Jakobids, an extremely plesiomorphic eukaryotic lineage. Frontiers in Microbiology, V. 6 Article 1288. (November 2015)
• Bernhard J, CR Morrison, E Pape, DJ Beaudoin, MA Todaro, M Pachiadaki, K Kormas, V Edgcomb. 2015. Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins. BMC Biology, V. 13(1), pp. 105-125. (November 2015)
• Cetinic I, MJ Perry, E D'Asaro, NT Briggs, N Poulton, M Sieracki. 2015. A simple optical index shows spatial and temporal heterogeneity in phytoplankton community composition during the 2008 North Atlantic Bloom Experiment. Biogeosciences, V. 12(7), pp. 2179-2194. (April 2015)
• Kopf A, Bicak M, Kottmann R, Schnetzer J, ........N Poulton, S Jones, R Collin, JA Fuhrmann.........2015. The ocean sampling day consortium. GigaScience, V. 4, pp. 27 (July 2015)
• Edmunds PJ, R Albright, RC Carpenter, A Chuie, T-Y Fan, S Harii, H Kitano, H Kurihara, L Legendre, S Mitarai, S Muko, Y Nozawa, J Padilla-Gamino, NN Price, K Salai, R Steneck, G Suzuki, M van Oppen, A Yarid, NL Satol, RD Gates. 2015. Geographic variation in long-term trajectories of change in coral recruitment: a global-to-l9ocal perspective. Marine & Freshwater Research DOI: 10.1071/MF14139 (February 2015)
• Alin SR, RE Brainard, NN Price, JA Newton, A Cohen, WT Petersen, EH DeCarlo, EH Shadwick, S Noakes, N Bednarsek. 2015. Characterizing the natural system: toward sustained, integrated coastal ocean acidification observing networks to facilitate resource management and decision support. Oceanography, V. 28(2), pp. 92-107. (June)
• Rauschenberg S, BS Twining. 2015. Evaluation of approaches to estimate biogenic particulate trace metals in the ocean. Marine Chemistry, DOI: 10.1016/j.marchem.2015.01.004. (January 2015)
• Pershing AJ, KE Mills, NR Record, K Stamieszkin, KV Wurtzell, CJ Byron, D Fitzpatrick, WJ Golet, E Koob. 2015. Evaluating trophic cascades as drivers of regime shifts in different ocean ecosystems. Philosophical Transactions of the Royal Society B: Biological Sciences. V. 370 (1659), pp. 1-9. (January 2015)
• Stamieszkin K, AJ Pershing, NR Record, CH Pilskaln, HG Dam, LR Feinberg. 2015. Size as the master trait in modeled copepod fecal pellet carbon flux. Limnology & Oceanography, DOI: 10.1002/lno.10156. (January 2015)
• Golet W, NR Record, S Lehuta, M Lutcavage, B Galuardi, AB Cooper, AJ Pershing. 2015. The paradox of the pelagics: why bluefin tuna can go hungry in a sea of plenty. Marine Ecology Progress Series. V.527, pp. 181-192. (January 2015)
• Pershing AJ, MA Alexander, CM Hernandez, LA Kerr, A Le Bris, KE Mills, JA Nye, NR Record, HA Scannell, JD Scott, GD Sherwood, AC Thomas. 2015. Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery. ScienceXpress, DOI: 10.1126/science.aac9819. (October 2015)
• Scott JJ, JA Breier, GW Luther III, D Emerson. 2015. Microbial iron mats at the Mid-Atlantic Ridge and evidence that zetaproteobacteria may be restricted to iron-oxidizing marine systems. PLoSONE, DOI: 10.1371/journal.pone.o119284. (March 2015)
• Grubbs KJ, JJ Scott, KJ Budsberg, H Read, TC Balser, CR Currie. 2015. Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses. PLoS ONE, V. 10(4) Article e0121697. (April 2015)
• Sanders JG, AC Beichman, J Roman, JJ Scott, D Emerson, JJ McCarthy, PR Girguis. 2015. Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores. Nature Communications, DOI: 10.1038/ncomms9285. (September 2015)
• Stepanauskas R. 2015. Redefining microbial diversity from its single-celled building blocks. Environmental Microbiology Reports. V. 7(1), pp. 36-37. (February 2015)
• Youssef NH, C Rinke, R Stepanauskas, I Farag, T Woyke, MS Elshahed. 2015. Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum "Diapherotrites". The ISME Journal, V. 9(2), pp. 447-460. (August 2015)
• Field EK, A Scyrba, AE Lyman, CC Harris, T Woyke, R Stepanauskas, D Emerson. 2015. Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. ISME Journal, V. 9, pp. 857-870. (March 2015)
• Martijn J, F Schultz, K Zaremba-Niedzwiedzka, J Viklund, R Stepanauskas, SGE Andersson. 2015. Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. The ISME Journal, DOI: 10.1038/ismej.2015.46. (April 2015)
• Stepanauskas R. 2015. Wiretapping into microbial interactions by single cell genomics. Frontiers in Microbiology, V. 6, Article 258. (April 2015)
• Ngugi DK, J Blom, R Stepanauskas, U Stingl. 2015. Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines. The ISME Journal, V. pp. 1-17. (December 2015)
• Eiler, A, R Mondav, L Sinclair, L Fernandez-Vidal, DG Scofield, P Schwientek, M Martinez-Garcia, D Torrents, KD McMahon, SGE Andersson, R Stepanauskas, T Woyke, S Bertilsson. 2015. Tuning fresh: radiation through reqiring of central metabolism in streamlined bacteria. The ISME Journal, V. pp. (December 2015)
• Lam PJ, BS Twining, C Jeandel, A Roychoudhury, J Resing, PH Santschi. 2015. Methods for analyzing the concentration and speciation of major and trace elements in marine particles. Progress in Oceanography, V. 133, pp. 32-42. (January 2015)
• Pizeta, I, S Sander, R Hudson, D Omanovic, O Baars, K Barneau, K Buck, R Bundy, G Carrasco, P Croot, C Garnier L Gerringa, M Gledhill, K Hirose, Y Kondo, L Laglera, J Nuester, M Rijkenberg, S Takeda, BS Twining, M Wells. 2015. Interpretation of complexometric titration data: an intercomparison of methods for estimating models of trace metal complexation by natural organic ligands. Marine Chemistry, V. 173, pp. 3-24 (March 2015)
• Mawji E, Schlitzer R, EM Dodas C Abadie, W Abouchami, RF Anderson, O Baars, K Bakker......BS Twining...2015. The GEOTRACES intermediate data product 2014. Marine Chemistry, V. (April 2015)
• Twining BS, S Rauschenberg, PL Morton, DC Ohnemus, PJ Lam. 2015. Comparison of particulate trace element concentrations in the North Atlantic Ocean as determined with discrete bottle sampling and in situ pumping. Deep-Sea Research Pt. II: Topical Studies in Oceanography, V. 116, pp. 273-282. (June 2015)
• Boyd, PW, RF Strzepek, MJ Ellwood, DA Hutchins, SD Nodder, BS Twining, SW Wilhelm. 2015. Why are biotic iron pools uniform across high-and low-iron pelagic ecosystems? Global Biogeochemical Cycles, V. 29 (7), DOI: 10.1002/2014GB005014. (June 2015)
• Baines SB, Chen X, BS Twining, MR Landry. 2015. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research, DOI: 10.1093/plankt/fbv098. (December 2015)
• Twining BS, S Rauschenberg, P Morton, S Vogt. 2015. Metal contents of phytoplankton and labile particulate material in the North Atlantic Ocean. Progress in Oceanography, V. 137, pp. 261-283. (June 2015)
• Gledhill, DK, MM White, J Salisbury, H Thomas, I Misna, M Leibman, B Mook, J Grear, AC Candelmo, RC Chambers, CJ Gobler, CW Hunt, AL King, NN Price, SR Signorini, E Stancioff, C Stymiest, RA Wahle, JD Waller, ND Rebuck, ZA Wang, TL Capson, JR Morrison, SR Cooley, SC Doney. 2015. Ocean and coastal acidification off New England and Nova Scotia. Oceanography, V. 28(2), pp. 182-197. (June 2015)
• Chappell PD, LP Whitney, JR Wallace, AI Darer, S Jean-Charles, BD Jenkins. 2015. Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean. ISME Journal, V. 9(3), pp. 592-602. (March 2015)

2014

• Radovic JR, C Aeppli, RK Nelson, N Jimenez, CM Reddy, JM Bayona, J Albaiges. 2014. Assessment of photochemical processes in marine oil spill fingerprinting. Marine Pollution Bulletin, V. 79 (1-2), pp. 268-277. (February 2014)
• Aeppli C, RK Nelson, JR Radovic, CA Carmichael, DL Valentine, CM Reddy. 2014. Recalcitrance and degradation of petroleum biomarkers upon abiotic and biotic natural weathering of Deepwater Horizon oil. Environmental Science & Technology, V. 48, pp. 6726-6734. (June 2014)
• Gros J, CM Reddy, C Aeppli, RK Nelson, CA Carmichael, JS Arey. 2014. Resolving biodegradation patterns of persistent saturated hydrocarbons in weathered oil samples from the Deepwater Horizon disaster. Environmental Science & Technology. V. 48, pp. 1628-1637. (February 2014)
• Ruddy BM, M Huettel, JE Kostka, VV Lobodin, BJ Bythell, AM McKenna, C Aeppli, CM Reddy, RK Nelson, AG Marshall, RP Rodgers. 2014. Targeted petroleomics: analytical investigation of Macondo Well oil products from Pensacola Beach. Energy & Fuels, V. 28(6), pp. 4043-4050. (May 2014)
• Hopkins FE, SD Archer. 2014. Consistent increase in dimethyl sulphide (DMS) in response to high CO2 in five shipboard bioassays from contrasting NW European waters. Biogeosciences Discussions. V. 11(2), pp. 2267-2303. (February 2014)
• Archer SD, IR McDonald, CW Herbold, SC Cary. 2014. Characterisation of bacterioplankton communities in the meltwater ponds of Bratina Island, Victoria Land, Antarctica. FEMS Microbiology Ecology. V. 89, pp. 451-464. (June 2014)
• Connelly TL, SE Baer, JT Cooper, DA Bronk, B Wawrik. 2014. Urea uptake and carbon fixation by marine pelagic bacteria and archaea during the Arctic summer and winter seasons. Applied and Environmental Microbiology, V. 80, pp. 6013-6022. (July 2014)
• Baer SE, TL Connelly, RE Sipler, PL Yager, DA Bronk. 2014. Effect of temperature on rates of ammonium uptake and nitrification in the western coastal Arctic during winter, spring, and summer. Global Biogeochemical Cycles, V. 28(12), pp. 1455-1466. (December 2014)
• Balch WM, DT Drapeau, BC Bowler, ER Lyczkowski, LC Lubelczyk, SC Painter, AJ Poulton. 2014. Surface biological, chemical, and optical properties of the Patagonian Shelf coccolithophore bloom, the brightest waters of the Great Calcite Belt. Limnology & Oceanography, V. 59, pp. 1715-1732. (September 2014)
• Muller-Karger FE, MT Kavanaugh, E Montes, WM Balch, M Breitbart, FP Chavez, SC Doney, EM Johns, RM Letelier, MW Lomas, HM Sosik, AE White. 2014. A framework for a marine biodiversity observing network within changing continental shelf seascapes. Oceanography, V. 27, pp. 18-23. (June 2014)
• Balch WM, BC Bowler, LC Lubelczyk, MW Stevens, Jr. 2014. Aerial extent, composition, bio-optics and biogeochemistry of a massive under-ice algal bloom in the Arctic. Deep-Sea Research II: Topical Studies in Oceanography, V. 105, pp. 42-58. (July 2014)
• Arrigo KR, DK Perovich, RS Pickart, ZW Brown, GL van Kijken, KE Lowry, MM Mills, MA Palmer, WM Balch, NR Bates, CR Benitez-Nelson, E Brownlee, KE Frey, SR Laney, J Mathis, A Matsuoka, BG Mitchell, GWK Moore, RA Reynolds, HM Sosik, JH Swift. 2014. Phytoplankton blooms beneath the sea ice in the Chukchi Sea. Deep Sea Research Pt. II: Topical Studies in Oceanography, V. 105, pp. 1-16. (July 2014)
• Valiadi M, SC Painter, JT Allen, WM Balch, MD Iglesias-Rodriguez. 2014. Molecular detection of bioluminescent dinoflagellates in surface waters of the patagonian shelf during early austral summer 2008. PLoS ONE, V. 9(6), e98849. (June 2014)
• Kim DY, PDCountway , AC Jones, A Schnetzer, W Yamashita, C Tung, DA Caron. 2014. Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific. The ISME Journal, V. 8 (3), pp. 515-530. (March 2014)
• Alle A, Y Lie, Z Liu, SK Hu, AC Jones, DY Kim, PD Countway, LA Amaral-Zettler, SC Cary, EB Sherr. 2014. Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA gene sequences. Applied and Environmental Microbiology, doi: 10.1128/AEM.00057-14. (May 2014)
• Fernandez-Robledo, JA, GR Vasta, NR Record. 2014. Protozoan parasites of bivalve molluscs: literature follows culture. PLoS ONE, V. 9(6), e100872. (June 2014)
• Shridhar S, K Hassan, DJ Sullivan, GR Vasta, JA Fernandez-Robledo. 2014. Herbicides and anti-microbials that target plastic-associated enzymes inhibit the proliferation of the protozoan parasite Perkinsus marinus. International Journal for Parasitology: Drug and Drug Resistance.
• Wijayalath W, S Majji, Y Kleschenko, L Pow-Sang, TD Brumeanu, EF Villasante, GR Vasta, JA Fernandez-Robledo, S Casares. 2014. Humanized HLA-DR4 mice fed with the protozoan pathogen of oysters Perkinsus Marinus (dermo) do not develop noticeable pathology but elicit systemic immunity. PLosOne. V. 9, (1), e87435. (January 2014)
• Fields DM, JA Runge, C Thompson, SD Shema, RM Bjelland, CMF Durif, AB Skiftesvik. 2014. Infection of the planktonic copepod Calanus finmarchicus by the parasitic dinoflagellate Blastodinium spp: effects on grazing, respiration, fecundity and fecal pellet production. Journal of Plankton Research, DOI: 10.1093/plankt/fbu084. (October 2014)
• Fleming EJ, I Cetinic, CS Chan, DW King, D Emerson. 2014. Ecological succession among fe-oxidizing bacteria. The ISME Journal, V. 8, pp. 806-815. (April 2014)
• Goes JI, Gomes, HdR, EM Haugen, KT McKee, EJ D’Sa, AM Chekalyuk, DK Stoecker, PJ Stabino, SI Saitoh, RN Sambrotto. 2014. Fluorescence, pigment and microscopic characterization of Bering Sea phytoplankton community structure and photosynthetic competence in the presence of a cold pool during summer. Deep-Sea Research Pt. II: Topical Studies in Oceanography, DOI: 10.1016/j.dsr2.2013.12.004.
• Heil CA, DA Bronk, MR Mulholland, JM O'Neil, PW Bernhardt, S Muraski, JA Havens, GA Vargo. 2014. Influence of daylight surface aggregation behavior on nutrient cycling during a Karenia brevis (Davis) G. Hansen & Moestrup bloom: migration to the surface as a nutrient acquisition strategy. Harmful Algae, DOI: 10.1016/j.hal.2014.06.001. (June 2014)
• Heil CA, LK Dixon, E Hall, M Garrett, JM Lenes, JM O'Neil, BM Walsh, DA Bronk, L Killberg-Thoreson, GL Hitchcock, KA Meyer, MR Mulholland, L Procise, GJ Kirkpatrick, JJ Walsh, RW Weisberg. Blooms of Karenia brevis (David) G. Hansen & Moestrup on the West Florida Shelf: nutrient sources and potential management strategies based on a multi-year regional study. Harmful Algae, V. 38, pp. 127-140. (September 2014)
• Meyer KA, JM O'Neil, GL Hitchcock, CA Heil. 2014. Microbial production along the West Florida Shelf: responses of bacteria and viruses to the presence and phase of Karenia brevis blooms. Harmful Algae, DOI: 10.1016/j.hal.2014.04.015. (June 2014)
• Killberg-Thoreson L, MR Mulholland, CA Heil, MP Sanderson, JM O’Neil, DA Bronk. 2014. Nitrogen uptake kinetics in field populations and cultured strains of Karenia brevis. Harmful Algae, DOI: 10.1016/j.hal.2014.04.008. (May 2014)
• Mulholland MR, PW Bernhardt, I Ozmon, LA Procise, M Garrett, J O’Neil, CA Heil, DA Bronk. 2014. Contributions of diazotrophy to nitrogen inputs supporting Karenia brevis blooms in the Gulf of Mexico. Harmful Algae, V. 38, pp. 20-29. (May 2014)
•  Heil CA, DA Bronk, LK Dixon, G Hitchcock, G Kirkpatrick, MR Mulholland, J O’Neil, J Walsh, R Weisberg, M Garrett. 2014. The Gulf of Mexico EOHAB: Karenia Program 2006-2012. Harmful Algae, V. 38, pp. 3-7. (September 2014)
• Bronk DA, L Lillberg-Thoreson, RE Sipler, MR Mulholloand, QN Roberts, PW Bernhardt, M Garrett, JM O'Neil, CA Heil. 2014. Nitrogen uptake and regeneration (ammonium regeneration, nitrification and photoproduction) in waters of the West Florida Shelf prone to blooms of Karenia brevis. Harmful Algae, DOI: 10.1016/j.hal.2014.04.007. (May 2014)
• Bronk DA, L Killberg=Thoreson, RE Sipler, QN Roberts, MR Mulholland, P Bernhardt, M Garrett, CA Heil. 2014. Nitrogen uptake and regeneration(ammonium regeneration, nitrification and photoproduction) in waters of the West Florida Shelf prone to blooms of Karenia brevis. Harmful Algae, V. 38, pp. 50-62. (September 2014)
• Killberg-Thoreson L, RE Sipler, CA Heil, MJ Garrett, QR Roberts, DA Bronk. 2014. Nutrients release from decaying fish support microbial growth in the eastern Gulf of Mexico. Harmful Algae. V. 38, pp. 40-49. (May 2014)
• Jacquot JE, REA Horak, SA Amin, AH Devol, AE Ingalls, EV Armbrust, DA Stahl, JW Moffett. 2014. Assessment of the potential for copper limitation of ammonia oxidation by ARchaea in a dynamic estuary. Marine Chemistry, V. 162, pp. 37-49. (May 2014)
• Jacquot JE, JW Moffett. 2014. Copper distribution and speciation across the international GEOTRACES Section GA03. Deep-Sea Research Part II: Topical Studies in Oceanography, DOI: 10.1016/j.der2.2014.11.013. (November 2014)
• Testa JM, Y Li, YJ Lee, M Li, DC Brady, DM Di Toro, WM Kemp, JJ Fitzpatrick. 2014. Quantifying the effects of nutrient loading on dissolved O2 cycling and hypoxia in Chesapeake Bay using a coupled hydrodynamic-biogeochemical model. Journal of Marine Systems, V. 139, pp. 139-158. (June 2014)
• Lomas MS, JA Bonachela, SA Levin, AC Martiny. 2014. Impact of ocean phytoplankton diversity on phosphate uptake. Proceedings of the National Academy of Sciences. DOI: 10.1073/pnas.1420760111. (November 2014)
• Fawcett SE, MW Lomas, BB Ward, DM Sigman. 2014. The counterintuitive effect of summer-to-fall mixed layer deepening on eukaryotic new production in the Sargasso Sea. Global Biogeochemical Cycles, V. 28(2), pp. 86-102. (February 2014)
• Batmalle CS, HI Chiang, K Zhang, MW Lomas, AC Martiny. 2014. Development and bias assessment of a method for targeted metagenomic sequencing of marine cyanobacteria. Applied and Environmental Microbiology. V. 80(3), pp. 1116-1125. (February 2014)
• Martin P, ST Dyhrman, MW Lomas, N Poulton, BAS Van Mooy. 2014. Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus. Proceedings of the National Academy of Sciences, V. 111(22), pp. 8089-8094. (June 2014)
• Choi HY, GM Stewart, MW Lomas, RP Kelly SB Moran. 2014. Linking the distribution of 210 Po and 210Pb with plankton community along Line P, Northeast Subarctic Pacific. Journal of Environmental Radioactivity. DOI: 10.1016/j.jenvrad.2014.02.009 (March 2014)
• Cross JN, JT Mathis, MW Lomas, SB Moran, MS Baumann, D Shull, CW Mordy, NR Bates, R Gradinger, PJ Stabeno. 2014. Integrated assessment of the carbon budget in the Southeastern Bering Sea. Deep Sea Research II:Topical Studies in Oceanography, V. 109, pp. 112-124. (November 2014)
• Treibergs LA, SE Fawcett, MW Lomas, DM Sigman. 2014. Nitrogen isotopic response of prokaryotic and eukaryotic phytoplankton to nitrate availability in Sargasso Sea surface waters. Limnology and Oceanography. V. 59, pp. 972-985. (May 2014)
• Wallhead PJ, VC Garcon, JR Casey, MW Lomas. 2014. Long-term variability of phytoplankton carbonbiomass in the Sargasso Sea. Global Biogeochemical Cycles, DOI: 10.1002/2013GB004797. (July 2014)
• Zimmerman AE, AC Martiny, MW Lomas, SD Allison. 2014. Variations in phosphorus pools, RNA allocation and C:P stoichiometry along a nutrient supply gradient in the North Atlantic subtropical gyre. Biogeosciences. V. 11, pp. 1599-1611. (March 2014)
• Teng,Y-C, FW Primeau, JK Moore, MW Lomas, AC Martiny. 2014. Global-scale variations of the ratios of carbon to phosphorus in exported marine organic matter. Nature Geoscience, V.7, pp. 895-898. (November 2014)
• Martinez Martinez J, BK Swan, WH Wilson. 2014. Marine viruses, a genetic reservoir revealed by targeted viromics. ISME Journal, V. 8, pp. 1079-1988. (May 2014)
• Pagarete A, K Kusonnmano, K Petersen, S Kimmance, J Martinez Martinez, WH Wilson, JH Hehemann, MJ Allen, RA Sandaa. 2014. Dip in the gene pool: metagenomic survey of natural coccolithovirus communities. Virology, V. 466-467, pp. 129-137. (October 2014)
• Kimmance SA, MJ Allen, A Pagarete, J Martinez Martinez, WH Wilson. 2014. Reduction of photosystem II during a virus controlled Emiliana Huxleyi bloom. Marine Ecology Progress Series. V. 495(9), pp. 65-76. (January 2014)
• Gabric A, B Qu, PA Matrai. 2014. Investigating the coupling between phytoplankton biomass, aerosol optical depth and sea-ice cover in the Greenland Sea. Dynamics of Atmospheres and Oceans. V. 66, pp. 94-109. (June 2014)
• Tjernstrom M, C Leck, CE Birch, JW Bottenheim BJ Brooks, IM Brooks, L Backlin, RY-W Chang, E Granath, M Graus, A Hansel, J Heintzenberg, A Held, A Hind S de la Rosa, P Johnston, J Knulst, G de Leuuw, L di Liberto, M Martin, PA Matrai, T Mauritsen, M Muller, SJ Norris, MV Orellana, DA Orsini, J Paatero, POG Persson, G Qiuju, C Rauschenberg, Z Ristovski, J Sedlar, MD Shupe, B Sireau, A Sirevaag, S Sjogren, O Stetzer, E Swietlicki, M Szczodrak, P Vaattovaara, N Wahlberg, M Westberg, CR Wheeler. 2014. The Arctic Summer Cloud-Ocean Study (ASCOS): overview and experimental design. Atmospheric Chemistry and Physics, Arctic Summer Cloud Ocean Study (ASCOS), (ACP/OS/AMT Inter-Journal SI), Atmospheric Chemistry and Physics. V. 14, pp. 2823-2869. (March 2014)
• Halfacre JW, TN Knepp, PB Shepson, CR Stephens, KA Pratt, B Li, PK Peterson, SJ Walsh, WR Simpson, PA Matrai, JW Bottenheim, S Netcheva, DK Perovich, A Richter. 2014. Temporal and spatial characteristics of ozone depletion events from measurements in the Arctic. Atmospheric Chemistry and Physics, V. 14, pp. 4875-4894. (May 2014)
• Mumford AC, JL Barringer, PA Reilly, DD Eberl, AE Blum, LY Young. 2014. Biogeochemical environments of streambed-sediment pore waters with and without arsenic enrichment in a sedimentary rock terrain, New Jersey Piedmont, USA. Science of the Total Environment, DOI: 10.1016/j.scitotenv.2014.07.104. (August 2014)
• Barringer JL, PA Reilly, DD Eberl, AC Mumford, WM Benzel, Z Szabo. 2014. Arsenic in New Jersey coastal plain streams, sediments, and shallow groundwater: effects from different geologic sources and anthropogenic inputs on biogeochemical and physical mobilization processes. USGS Professional Paper; Scientific Investigations Report 2013-5107. (January 2014)
• Nuester J, S Shema, A Vermont, DM Fields, BS Twining. 2014. The regeneration of highly bioavailable iron by meso-and microzooplankton. Limnology and Oceanography. V. 59(4), pp. 1399-1409. (July 2014)
• Nuester J, M Newville, BS Twining. 2014. Distributions of iron, phosophorus and sulfur along trichomes of the cyanobacteria Trichodesmium. Metallomics. V. 6, pp. 1141-1149. (April 2014)
• Ohnemus DC, ME Auro, RM Sherrell, M Lagerstrom, PL Morton, BS Twining, S Rauschenberg, PJ Lam. 2014. Laboratory intercomparison of marine particulate digestions including Piranha: a novel chemical method for dissolution of polyethersulfone filters. Limnology & Oceanography: Methods, V.12, pp. 530-547. (May 2014)
• Lamborg CH, CR Hammerschmidt, KL Bowman, GJ Swarr, KM Munson, DC Ohnemus, PJ Lam, LE Heimburger, MJA Rijkenberg, MA Saito. 2014. A global ocean inventory of anthropogenic mercury based on water column measurements. Nature, V. 512, pp. 65-68. (August 2014)
• Orcutt BN, DE LaRowe, KG Lloyd, H Mills, W. Orsi, BK Reese, J Sauvage, JA Huber, J Amend. 2014. IODP Deep Biosphere Research Workshop report- a synthesis of recent investigations, and discussion of new research questions and drilling targets. Scientific Drilling. V. 17, pp. 61-66. (April 2014)
• Orcutt BN, KJ Edwards. 2014. "Life in the Ocean Crust: Lessons From Subseafloor Laboratories". In: Stein, Ruediger, Blackman, Donna, Inagaki, Fumio, Larsen, Hans-Christian (Eds), Earth and LifeProcessesDiscovered from Subseafloor Environments: A Decade of Science Achieved by the IntegratedOcean Drilling Program (IODP): 7 (Developments in Marine Geology). Chapter 2.5, pp. 175-196. Amsterdam, Elsevier. (December 2014)
• Orcutt BN, I Cetinic. 2014. Women in oceanography: continuing challenges. Oceanography, V. 27(4) Supplement. pp. 5-13. (December 2014)
• Koweek D, RB Dunbar, JS Rogers, GJ Williams, N Price, D Mucciarone, L Teneva. 2014. Environmental and ecological controls of coral community metabolism on Palmyra Atoll. Coral Reefs, V. 34, pp. 339-351.  (September 2014)
• Pershing AJ, KE Mills, NR Record, K Stamieszkin, K Wurtzell, C Byron, D Fitzpatrick, W Golet, E Koob. 2014. Evaluating trophic cascades as drivers of regime shifts in different ocean ecosystems. Philosophical Transactions. Royal Society B, V. 370: 20130265. (November 2014)
• Maps F, NR Record, AJ Pershing. 2014. A metabolic approach to dormancy in pelagic copepods helps explaining inter-and intra-specific variability in life-history strategies. Journal of Plankton Research, V. 36(1), pp. 18-30. (February 2014)
• Record NR, AJ Pershing, F Maps. 2014. Plankton post-paradox. ICES Journal of Marine Science. V. 71(2), pp. 296-298. (February 2014)
• Runge JA, R JI, CRS Thompson, NR Record, C Chen, DC Vandemark, JE Salisbury, F Maps. 2014. Persistence of Calanus finmarchicus in the western Gulf of Maine during recent extreme warming. Journal of Plankton Research, DOI: 10.1093/plankt/fbu098 , pp. 1-12. (November 2014)
• Resto YA, JA Fernandez Robledo. 2014. Identification of MMV malaria box inhibitors of Perkinsus marinus using an ATP-based bioluminescence assay. PLoS One, DOI: 10.1371/journal.pone.0111051. (October 2014)
• MacDonald DJ, AJ Findlay, P Hredzak-Showalter, SM McAllister, ST Krepski, SG Cone, J Scott, SK Bennett, CS Chan, D Emerson, GW Luther III. 2014. Using in situ voltammetry as a tool to search for iron oxidizing bacteria: from fresh water wetlands to hydrothermal vent sites. Environmental Science: Processes and Impacts, V. 16, pp. 2117-2126. (May 2014)
• Shimmield GB. 2014. Biogenic Barium. In: J Harff , M Meschede, S Petersen, J Thiede, Editors. In: Encyclopedia of Marine Geosciences. (Encyclopedia of Earth Sciences Series) Dordrecht, Springer-Verlag, 2014. Pp. 1-2 (February 2014)
• Massana R, J del Campo, ME Sieracki, S Augic R Logares. 2014. Exporing the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. The ISME Journal, V. 8(4), pp. 854-866. (April 2014)
• Del Campo J, ME Sieracki, R Molestina, PJ Keeling, R Massana, I Ruiz-Trillo. 2014. The others: our biased perspective of eukaryotic genomes. Trends in Ecology and Evolution, V. 29 (5), pp. 252-259. (May 2014)
• Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D. 2014. Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. The ISME Journal, V 9, pp. 857-870. (October 2014)
• Engel P, R Stepanauskas, NA Moran. 2014. Hidden diversity in honey bee gut symbionts detected by single-cell genomics. PLOS Genetics, DOI: 10.1371/journal.pgen.1004596. (September 2014)
• Kashtan N, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, H Ding, P Marttinen, R Malmstrom, R Stocker, MJ Follows, R Stepanauskas, SW Chisholm. 2014. Single cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science. V. 344 (6182), pp. 416-420. (April 2014)
• Wasmund KL, KG Schrieber, DG Lloyd, A Petersen, R Schramm, R Stepanauskas, BB Jorgensen, L Adrian. 2014. Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. The ISME Journal, V. 8(2), pp. 383-397. (February 2014)
• Wilkins MJ, DW Kennedy, CS Castelle, EK Field, R Stepanauskas, JK Fredrickson, AE Konopka. 2014. Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. Microbiology, V. 160 (Pt.2) pp. 362-372. (February 2014)
• Youssef NH, C Rinke, R Stepanauskas, I Farag, T Woyke, MS Elshahed. 2014. Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum "Diapherotrites. The ISME Journal, V. 9, pp. 447-460. (August 2014)
• Roux S, AK Hawley, MT Beltran, M Scofield, P Schwientek, R Stepanauskas. 2014. Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics. eLife Sciences, DOI: 10.7554/eLife.03125. (August 2015)
• Thrash JC, B Temperton, BK Swan, ZC Landry, E DeLong, R Stepanauskas, SJ Giovannoni. 2014. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. The ISME Journal, V. 8 (7), pp. 1440-1451. (July 2014)
• Swan BK, M Chaffin, M Martinez-Garcia, HG Morrison, E Field, NJ Poulton, EDP Masland, CC Harris, A Sczyrba, PSG Chain, S Koren, T Woyke, R Stepanauskas. 2014. Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres. PLOS One. V. 9(4) e95380. (April 2014)
• Luo H, BK Swan, R Stepanauskas, AL Hughes, MA Moran. 2014. Comparing effective population sizes of dominant marine alphaproteobacteria lineages. Environmental Micobiology Reports, V. 6(2), PP. 167-172. (April 2014)
• Luo H, BB Tolar, BK Swan, CL Zhang, R Stepanauskas, MA Moran JT Hollibaugh. 2014. Single-cell genomics shedding light on marine Thaumarchaeota diversification. The ISME Journal, V. 8(3), pp. 732-736. (April 2014)
• Luo H, BK Swan, R Stepanauskas, AL Hughes, MA Moran. 2014. Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters. The ISME Journal, V. 8(7), pp. 1428-1439. (July 2014)
• Rinke C, J Lee, N Nath, D Goudeau B Thompson, N Poulton, E Ferguson, R Malmstrom, R Stepanauskas, T Woyke. 2014. Obtaining genomes from uncultivated environmental microorganism. Nature Protocols. V. 9(5), pp. 1038-1048. (May 2014)
• Nuester J, M Newville, BS Twining. 2014. Distributions of iron, phosphorus and sulfur along trichomes of the cyanobacteria Trichodesmium. Metallomics, V. 6, pp. 1141-1149.(June 2014)
• Twining BS, SD Nodder, AL King, DA Hutchins, GR LeCleir, JM DeBruyn, EW Maas, S Vogt, SW Wilhelm and PW Boyd. 2014. Differential remineralization of major and trace elements in sinking diatoms. Limnology and Oceanography. V. 59(3), pp. 689-704. (May 2014)
• Twining BS, Rauschenberg S, Morton PL, Ohnemus PL, Lam PJ. 2014. Comparison of particulate trace element concentrations in the North Atlantic ocean as determined with discrete bottle sampling and in situ pumping. Deep-Sea Research Pt. II: Topical Studies in Oceanography, DOI: 10.1016j.dsr2.2014.11.005. (November 2014)
• Nuester J, S Shema, A Vermont, DM Fields, BS Twining. 2014. The regeneration of highly bioavailable iron by meso- and microzooplankton. Limnology and Oceanography, V. 59(4) pp. 1399-1409. (July 2014)
• White MM, LS Mullineaux, DC McCorkle, AL Cohen. 2014. Elevated pCO2 exposure during fertilization of the bay scallop Argopecten irradians reduces larval survival but not subsequent shell size. Marine Ecology Progress Series, V. 498, pp. 173-186. (February 2014)
• Pfister CA, AJ Esbuagh, CA Frieder, H Baumann, EE Bockmon, MM White, BR Carter, HM Benway, CA Blanchette, E Carrington, JB McClintock, DC McCorkle, WR McGillis, TA Mooney, P Ziveri. 2014. Detecting the unexpected: a research framework for ocean acidification. Environmental Science and Technology, V. 48, pp. 9982-9994. (August 2014)
• Ankrah NYD, CR Budinoff, WH Wilson, SW Wilhelm, A Buchan. 2014. Genome sequence of the sulfitobacter sp. Strain 2047-infecting lytic phage OCB2047-B. Genome Announcements, V. 2, DOI: 10.1128/genomeA.00945-00913. (January 2014)
• Ankrah NYD, CR Budinoff, WH Wilson, SW Wilhelm, A Buchan. 2014. Genome sequences of two temperate phages, OCB2047-A and OCB2047-C, infecting sulfitobacter sp. Strain 2047. Genome Announcements, V. 2. DOI: 10.1128/genomeA.00108-14. (June 2014)
• Keeling PF, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, EV Armbrust, JM Archibald, AK Bharti, CJ Bell, WH Wilson. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functionaldiversity of eukaryotic life in the oceans through transcriptome sequencing. PLOS Biology, V. 12: e1001889. (June 2014)
• Wilson WH, IC Gilg,A Duarte, H Ogata. 2014. Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal megaviruses. Virology, V. 466-467, pp. 123-128.  (July 2014)
• Moniruzzaman M, GR LeCleir, CM Brown, CJ Gobler, DK Bidle, WH Wilson, SW Wilhelm. 2014. Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host-virus coevolution. Virology, V. 466-467, pp. 60-70. (October 2014)
• Lawrence SA, JE Davy, GS Aeby, WH Wilson, SK Davy, 2014. Quantification of virus-like particles suggests viral infection in corals affected by Porites tissue loss. Coral Reefs, V. 33(3), pp. 687-691. (September 2014)
• Lawrence SA, JE Davy, GS Aeby, WH Wilson, SK Davy. 2014.Porites white patch syndrome: associated viruses and disease physiology. Coral Reefs, V. 1-9, DOI: 10.1007/s00338-014-1218-2. (September 2014)
• Lawrence SA, WH Wilson, JE Davy, SK Davy. 2014. Latent virus-like infections are present in a diverse range of Symbiodinium spp. (Dinophyta). Journal of Phycology, V. 50, pp. 984-997. (December 2014)
• Weitz JS, CA Stock, SW Wilhelm, L Bourouiba, ML Coleman, A Buchan, MJ Follows, JA fuhrman, LF Jover, JT Lennon, M Middelboe, DL Sonderegger, CA Suttle, BP Taylor, TF Thingstad, WH Wilson, KE Wommack. 2014. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. The ISME Journal, pp. 1013. (December 2014)
• Testa JM, Y Li, YJ Lee, M Li, DC Brady, DM Di Toro, WM Kemp, JJ Fitzpatrick. 2014. Quantifying the effects of nutrient loading on dissolved O2 cycling and hypoxia in Chesapeake Bay using a coupled hydrodynamic biogeochemical model. Journal of Marine Systems, V. 139, pp. 139-158. (November 2014)

2013

• Ziska, F, B Quack, K Abrahamsson, SD Archer, E Atlas, T Bell, JH Butler, LJ Carpenter, CE Jones, NRP Harris, H Hepach, KG Heumann, C Hughes, J Kuss, K Kruger, P Liss, RM Moore, A Orlikowska, S Raimund, CE Reeves, W Reifenhauser, AD Robinson, C Schall, T Tanhua, S Tegtmeier, S Turner, L Wang, D Wallace, J Williams, H Yamamoto, S Yvon-Lewis, Y Yokouchi. 2013. Global sea-to-air flux climatology for bromoform, dibromomethane and methyl iodide. Atmospheric Chemistry and Physics. V. 13, pp.8915-8934. (September 2013)
• Six, KD, S Kloster, T Ilyina, SD Archer, K Zhang, E Maier-Reimer. 2013. Global warming amplified by reduced sulphur fluxes as a result of ocean acidification. Nature Climate Change. V. 3, pp. 975-978. (August 2013)
• Yang, M, SD Archer, BW Blomquist, DT Ho, VP Lance, RJ Torres. 2013. Lagrangian evolution of DMS during the Southern Ocean gas exchange experiment: – the effects of vertical mixing and biological community shift. Journal of Geophysical Research. V. 118(12), pp. 6774-6790. (December 2013)
Poulton AJ, S Painter, JR Young, NR Bates, BC Bowler, DT Drapeau, E Lyczskowski, WMBalch. 2013. The 2008 Emiliania huxleyi bloom along the Patagonian Shelf: ecology, biogeochemistry and cellular clacification. Global Biogeochemical Cycles, V. 27, pp. 1-11.
• Emerson, D, W Bellows, JK Keller. 2013. Anaerobic metabolism in tidal freshwater wetlands: II. Effects of plant removal on archaeal microbial communities. Estuaries and Coasts. V. 36(3), pp. 471-481. (May 2013)
• Emerson, D, EK Field, O Chertkov, KW Davenport, L Goodwin, C Munk, M Nolan, T Woyke. 2013. Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics. Frontiers in Microbiology, V. 4, pp. 254. (September 2013)
• Shridhar, S , K Hassan, DJ Sullivan, GR Vasta, JA Fernandez-Robledo. 2013. Quantitative assessment of the proliferation of the protozoan parasite Perkinsus marinus using a bioluminescence assay for ATP content. International Journal for Parasitology: Drugs and Drug Resistance. V. 3, pp. 85-92. (December 2013)
• Feng, C, A Ghosh, MN Amin, B Giomarelli, S Shridhar, A Banerjee, JA Fernandez-Robledo, MA Bianchet, LX Wang, IBH Wilson, GR Vasta. 2013. The galectin CvGal1 from the eastern oyster (Crassostrea virginica) binds to blood group A oligosaccharides on the hemocyte surface. The Journal of Biological Chemistry. V. 288 (34), pp. 24394-24409. (July 2013)
• Fleming, EJ , R Davis, C Moyer, CS Chan, B Tebo, D Emerson. 2013. Hidden in plain sight: discovery of sheath-forming iron-oxidizing Zetaproteobacteria at Loihi Seamount, Hawaii, USA. FEMS Microbial Ecology. V. 85, pp. 116-127. Editor’s Pick. ((April 2013)
• Fleming, EJ, I Cetinic, CS Chan, DW King, D Emerson. 2013. Ecological succession among fe-oxidizing bacteria. The ISME Journal, doi:.org/10.1038/ismej.2013.197. September 2013)
• Sipler, RE, DA Bronk, SP Seitzinger, RJ Lauck, LR McGuinness, GJ Kirkpatrick, CA Heil, LJ Kerkhof, OM Schofield. 2013. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis. Marine Ecology Progress Series. V. 483, pp. 31-45. (May 2013)
• Larsen, PF ,KA Wilson, D Morse. 2013. Observations on the expansion of a relict population of Eastern Oysters (Crassostrea virginica) in a Maine estuary: implications for climate change and restoration. Northeastern Naturalist. V. 20, pp. 28-32. (October 2013)
• Martiny, AC, TA Chau, FW Primeau, JA Vrugt, JK Moore, SA Levin and MW Lomas. 2013. Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter. Nature Geoscience. V. 6, pp. 279-283. (April 2013)
• Church, MJ , MW Lomas, F Muller-Karger. 2013. Sea change: charting the course for biogeochemical ocean time-series research in a new millennium. Deep-Sea Research II. V. 93, pp. 2-15. (January 2013)
• Lomas, MW, NR Bates, RJ Johnson, AH Knap, DK Steinberg, CA Carlson. 2013. Two decades and counting: overview of 24 years of sustained open ocean biogeochemical measurements. Deep-Sea Research II. V. 93, pp. 16-32. (January 2013)
• Casey, JR, JP Aucan SR Goldberg, MW Lomas. 2013. Changes in partitioning of carbon amongst photosynthetic pico- and nano-plankton groups in the Sargasso Sea in response to changes in the North Atlantic Oscillation. Deep-Sea Research II. V. 93, pp. 58-70. (January 2013)
• Singh, A, MW Lomas, NR Bates. 2013. Revisiting N2 fixation in the North Atlantic Ocean: significance of deviations from the Redfield Ratio, atmospheric deposition and climate variability. Deep-Sea Research II. V. 93, pp. 148-158. (January 2013)
• McLaughlin, K, JA Sohn, GA Cutter, MW Lomas, A Paytan. 2013. Phosphorus cycling in the Sargasso Sea: investigation using the oxygen isotopic composition of phosphate, enzyme labeled fluorescence, and turnover times. Global Biogeochemical Cycles. V. 27(2), pp. 375-387. (June 2013)
• Baumann, MS, SB Moran, RP Kelly, MW Lomas, and DH Shull. 2013. 234 The balance and implications for seasonal particle retention in the eastern Bering Sea. Deep-Sea Research II. V. 94, pp. 7-21. (October 2013)
• Owens, SA, KO Buesseler, CH Lamborg, J Valdes, MW Lomas, RJ Johnson, DK Steinberg, DA Siegel. 2013. A new times series of particle export from neutrally buoyant sediment traps at the Bermuda Atlantic Time-series Study site. Deep-Sea Research I. V. 72, pp. 31-47. (January 2013)
• Amacher, J, S Neuer, C Baysinger, MW Lomas. 2013. DNA-based molecular fingerprinting of eukaryotic protists and cyanobacteria contributing to sinking particle flux at the Bermuda Atlantic time-series study. Deep Sea Research II. V. 93, pp. 71-83. (September 2013)
• Peloquin, J, C Swan, N Gruber, M Vogt, H Claustre, J Ras, J Uitz, R Berlow, M Behrenfeld, R Bidigare, Hl Dierssen, G Ditullio, E Fernandez, C Gallienne, S Gibb, R Goericke, L Harding, E Head, P Holligan, S Hooker, D Karl, M Landry, R Letelier, CA Llewellyn, MW Lomas, M Lucas, A Mannino, J-C Marty, BG Mitchell, F Muller-Karger, Nl Nelson, C O’Brien, B Prezelin, D Repeta, WO Smith,Jr., D Smythe-Wright, R Stumpf, A Subramaniam, K Suzuki, C Trees, M Vernet, N Wasmund, and S Wright. 2013. The MAREDAT global database of high performance liquid chromatography marine pigment measurements. Earth System Science Database Discussions. Vol. 5, pp.109-123. (March 2013)
• Flombaum, P, JL Gallegos, RA Gordillo, J Rincon, LL Zabala, N Jiao, DM Karl, WKWLi, MW Lomas, D Veneziano, CS Vera, JA Vrugt. 2013. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proceedings of the National Academy of Sciences. V. 110(24), pp. 9824-9829. (June 2013)
• Martiny, AC, JA Vrugt, FW Primeau, MW.Lomas. 2013. Regional variation in the particulate organic carbon to nitrogen ratio in the surface ocean. Global Biogeochemical Cycles. V. 27(3), pp. 723-731. (September 2013)
• Bauman, MS, SB Moran, MW Lomas, RP Kelly, DW Bell. 2013. Seasonal decoupling of particulate organic carbon export and net primary production in relation to sea-ice extent at the shelf break of the eastern Bering Sea: implications for off-shelf export of carbon. Journal of Geophysical Research: Oceans. V. 118(10), pp. 5504-5522. (October 2013)
• Martinez Martinez, J, BK Swan, WH Wilson. 2013. Marine viruses, a genetic reservoir revealed by targeted viromics. The ISME Journal, doi: 10.1038/ismej.2013.214. (December 2013)
• Garcia, SL, KD McMahon, M Martinez-Garcia, A Srivastava, A Sczyrba, R Stepanauskas, HP Grossart, T Woyke, F Warnecke. Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. 2013. The ISME Journal. V. 7 (1), PP. 137-147. (January 2013)
• Matrai, P, E Olson, S Suttle, V Hill, LA Codispoti, B Light, M Steele. 2013. Synthesis of primary production in the Arctic Ocean: I: surface waters, 1954-2007. Progress in Oceanography V. 110, pp. 93-106. (March 2013)
• Hill, VJ, P Matrai, E Olson, et al. 2013. Synthesis of integrated primary production in the Arctic Ocean: II. In situ and remotely sensed estimates, 1999-2007. Progress in Oceanography. V. 110, pp. 107-125. (March 2013)
• Codispoti, L, V Kelly, A Thessen, P Matrai, S Suttles, V Hill, M Steele, B Light. 2013. Synthesis of primary production in the Arctic Ocean: III: Nitrate and phosphate based estimates of net community production. Progress in Oceanography. V. 110, pp. 126-150. (March 2013)
• Matrai, PA, and S Apollonio. 2013. New estimates of microalgae production based upon nitrate reductions under sea ice in Canadian shelf seas and the Canada Basin of the Arctic Ocean. Marine Biology. V. 160 (6), pp. 1297-1309. (June 2013)
• Gali, M., . Simo, M Vila-Costa, C Ruiz-Gonzalex, JM Gasol, and PA Matrai. 2013. Diel patterns of oceanic dimethylsulfide (DMS) cycling: microbial and physical drivers. Global Biogeochemical Cycles. V. 27(3), pp. 620-636. (July 2013)
• McBeth, JM, EJ Fleming, D Emerson. 2013 . The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA. Environmental Microbiology Reports. V. 5(3), pp. 453-463. (March 2013)
• Lee, JS, JM McBeth, RI Ray, BJ Little, D Emerson. 2013. Iron cycling at corroding carbon steel surfaces. Biofouling: The Journal of Bioadhesion and Biofilm Research. V. 29(10), pp. 1243-1252. (October 2013)
• Mumford, AC, N Yee, LY Young. 2013. Precipitation of alacranite (As8S9) by a novel As(V)-respiring anaerobe strain MPA-C3. Environmental Microbiology. V. 15, pp. 2748-2760. (October 2013)
• Wang, F, S Lu, BN Orcutt. 2013. Discovering the role of subsurface microorganisms: progress and future of deep biosphere investigation. Chinese Science Bulletin. V. 58(4-5) , pp. 467. (February 2013)
• Orcutt, BN, C G Wheat, O Rouxel, S Hulme, KJ Edwards, W Bach. 2013. Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model. Nature Communications. V. 4 (2539). (September 2013)
• Wheat, CG, SM Hulme, AT Fisher, BN Orcutt, K Baker. 2013. Seawater recharge into oceanic crust: IODP Exp. 327 site U1363 grizzly bare outcrop. Geochemistry, Geophysics, Geosystems. V. 14(6), pp. 1957-1972. (June 2013)
• Toner, BM, RA Lesniewski, JJ Marlow, LJ Briscoe, CM Santelli, W Bach, BN Orcutt, KJ Edwards. 2013. Mineralogy drives bacterial biogeography of hydrothermally inactive seafloor sulfide deposits. Geomicrobiology Journal. V. 30 (4), 2013, pp. 313-326. (February 2013)
• Haddad, AG, MK Turner, C Joseph, BN Orcutt, L Samuelson, & the Shipboard Parties of IODP Expedition 336 and MSM20/5. 2013. The Classroom Connection Program: bringing deep sea research to students of all learning levels. Current: The Journal of Marine Education. V. 28(2), pp. 51-56. (February 2013)
• Orcutt BN, S Cooper, A Haddad, C Joseph, S Schroeder. 2013. The "Adopt-A-Microbe" Project: a multi-disciplinary science curriculum for middle school students. Current: The Journal of Marine Education. V. 28(3), pp. 14-15. (March 2013)
• Orcutt, BN, DE Larowe, JF Biddle, FS Colwell, BT Glazer, BK Reese, JB Kirkpatrick, LL Lapham, HJ Mills, JS Sylvan, SD Wankel and CG Wheat. 2013. Microbial activity in the marine deep biosphere: progress and prospects. Frontiers in Microbiology. V. 4 (189).(July 2013)
• Record NR, AJ Pershing, F Maps, 2013. The paradox of the "paradox of plankton". ICES Journal of Marine Science, V. 71(2), pp. 236-240. ((June 2013)
• Record, NR, AJ Pershing, F Maps. 2013. Emergent copepod communities in an adaptive trait-structured model. Ecological Modelling. V. 260, pp. 11-24. (March 2013)
• Barton, AD, AJ Pershing, E Litchman, NR Record, KF Edwards, ZV Finkel, T Kiorboe, BA Ward. 2013. The biogeography of marine plankton traits. Ecology Letters. V. 16(4), pp. 522-534. (June 2013)
• Lehuta, S, P Petitgas, S Mahevas, M Huret, Y Vermard, A Uriarte, NR Record. 2013. Selection and validation of a complex fishery model using an uncertainty hierarchy. Fisheries Research. V. 143, pp. 57-66. (June 2013)
• Rynearson, TA, K Richardson, RS Lampitt, ME Sieracki,AJ Poulton, MM Lyngsgaard, MJ Perry. 2013. Major contribution of diatom resting spores to vertical flux in the sub-polar North Atlantic. Deep-Sea Research Pt.I: Oceanographic Research Papers. V. 82, pp. 60-71. (August 2013)
• Garcia, LG, KD McMahon, M Martinez-Garcia, A Srivastava, A Sczyrba, R Stepanauskas, HP Grossart, T Woyke, F Warnecke. 2013. Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. The ISME Journal. V. 7, pp. 137-147. (July 2013)
• Zarenba-Niedzwiedska, K, J Viklund, W Zhao, J Ast, A Sczyrba, T Woyke, KD McMahan, R Stepanauskas, SGE Andersson. 2013. Single cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade. Genome Biology. V. 14 (11): R130. (November 2013)
• Nurk, S, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, AD Prjibelski, A Pyshkin, AA Sirotkin, Y Sirotkin, R Stepanauskas, SR Clingenpeel, T Woyke, JS Mclean, R Lasken, G Tesler, MA Alekseyev, PA Pevzner. 2013. Assembling singe-cell genomes and mini-metagenomes from chimeric MDA products. Lecture Notes in Computer Science. V. 7821, LNBI, pp. 158-170. (October 2013)
• Garrity GM, J Banfield, J Eisen, N van der Lelis, T McMahon, D Rusch, E Delong, MA Moran, C Currie, J Furhman, S Hallam, P Hugenholtz, N Moran, K Nelson, R Roberts, R Stepanauskas. 2013. Prokaryotic super program advisory committee DOE Joint Genome Institute, Walnut Creek, CA, Masrch 27, 2012. Standards in Genomic Sciences. V. 8(3). (July 2013)
• Eiler, A, K Zaremba-Niedzwiedzka, M Martinez-Garcia, KD McMahon, R Stepanauskas, SGE Andersson, S Bertilsson. 2013. Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environmental Microbiology. DOI: 10.1111/1462-2920.12301. (September 2013)
• Lloyd, KG, L Schreiber, DG Petersen, KUKjeldsen, MA Lever, AD Steen, R Stepanauskas, M Richter, S Kleindienst, S Lenk, A Schramm, BB Jorgensen. 2013. Predominant archaea in marine sediments degrade detrital proteins. Nature. V. 496, pp. 215-218. (March 2013)
• Zhaxybayeva, O, R Stepanauskas, NR Mohan, RT Papke. 2013. Cell sorting analysis of geographically separated hypersaline environments. Extremophiles. V. 17, pp. 265-275. (January 2013)
• Rinke, C, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, A Darling, S Malfatti, BK Swan, EA Gies, JA Dodsworth, BP Hedlund, G Tsiamis, SM Sievert, WT Liu, JA Eisen, SJ Hallam, NC Kyrpides, R Stepanauskas, EM Rubin, P Hugenholtz, T Woyke. 2013. Insights into the phylogeny and coding potential of microbial dark matter. Nature. V. 499, pp. 431-437. (July 2013)
• Swan, BK, B Tupper, A Sczyrba, FM Lauro, M Martinez-Garcia, JM Gonzalez, H Luo, JJ Wright, ZC Landry, NW Hanson, B Thompson, NJ Poulton, P Schwientek, S Gonzalex-Acinas, SJ Giovannoni, MA Moran, SJ Hallam, R Cavicchioli, T Woyke, R Stepanauskas. 2013. Prevalent genome streamlining and latitudinal divergence of marine bacteria in the surface ocean. Proceedings of the National Academy of Sciences. V. 110, pp. 11463-11468. (July 2013)
• Fredrick, ND, JA Berges, BS Twining, D Nunez-Milland, FL Hellweger. 2013. Use of agent-based modeling to explore the mechanisms of intracellular phosphorus heterogeneity in cultured phytoplankton. Applied and Environmental Microbiology. V. 79 (14), pp. 4359-4368. (December 2013)
• Wilhelm, SW, AL King, BS Twining, GR LeCleir, JM DeBruyn, RF Strzepek, CL Breene, S Pickmerre, MJ Ellwood, PW Boyd, DA Hutchins. 2013. Elemental quotas and physiology of a southwestern Pacific ocean plankton community as a function of iron availability. Aquatic Microbial Ecology. V. 68 (3), pp. 185-194. (March 2013)
• Twining, BS, SB Baines. 2013. The trace metal composition of marine phytoplan kton. Annual Review of Marine Science. V. 5, pp. 191-215. (January 2013)
• Ingall, ED, JM Diaz, AF Longo, M Oakes, L Finney, S Vogt, B Lai, PL Yager, B S Twining, J A Brandes. 2013. Role of biogenic silica in the removal of iron from the Antarctic seas. Nature Communications. V. 4, pp. 1981. (June 2013)
• White, MM, DC McCorkle, LS Mullineaux, AL Cohen. 2013. Early exposure of bay scallops (Argopecten irradians) to high CO2 causes a decrease of larval shall growth. PLos One, Vol. 8 (4), e61065. (April 2013)
• Reid, EL, KD Weynberg, J Love, MN Isupov, JA Littlechild, WH Wilson, SL Kelly, DC Lamb, MJ Allen. 2013. Functional and structural characterization of a viral cytochrome b5. FEBS Letters, V. 587, pp. 3633-3639. (December 2013)
• Read, BA & 78 others including WH Wilson. 2013. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, V. 499, pp. 209-213. (July 2013)

2012

• Carpenter LJ, SD Archer, R Beale. 2012. Ocean-atmosphere trace gas exchange. Critical Review. Chemical Society Reviews, V. 41, pp. 6473-6506.
• Archer SD, FE Hopkins, SA Kimmance, J Stephens, RGJ Bellerby, KG Schulsa, J Pionek, A Engel. 2012. Contrasting response of DMS and DMSP to ocean acidification in Arctic waters. Biogeosciences Discussions, V. 9, pp. 12803-12843.
• Hopkins FE, SA Kimmance, J Stephens, RGJ Bellerby, CPD Brussard, J Czerny, KG Schultz, SD Archer. 2012. Response of halocarbons to ocean acidification in the Arctic. Biogeosciences Discussions, V. 9, pp. 8199-8239.
• Arrigo KR, DK Perovich, RS Pickart, ZW Brown, GL Van Dijken, KE Lowry, MM Mills, MS Palmer, WM Balch, F Bahr, NR Bates, C Benitez-Nelson, B Bowler, E Brownlee, JK Ehn, KE Frey, R Garley, SR Laney, L Lubelczyk, J Mathis, A Matsuoka, BG Mitchess, GW Moore, E Ortega-Retuerta, S Pal, CM Polashenski, RA Reynolds, B Schiever, HM Sosik, M Stephens, JH Swift. 2012. Massive phytoplankton blooms under Arctic sea ice. Science, V. 336 (6087), pp. 1408.
• Balch WM, DT Drapeau, BC Bowler, TG Huntington. 2012. Step-changes in the physical, chemical and biological characteristics of the Gulf of Maine, as documented by the GNATS time series. Marine Ecology Progress Series, V. 450, pp. 11-35.
• Caron DA, PD Countway, AC Jones DY Kim, A Schnetzer. 2012. Marine Protistan Diversity. In: Carlson, DA, Giovannoni, SJ. (eds) Annual Review of Marine Sciencel, V. 4, pp. 467-493.
• Howard MDA, AC Jones, A Schnetzer, PD Countway, C Tomas, RM Kudela, K Hayashi, P Chia, DA Caron. 2012. Quantitative real-time phlymerase chain reaction for Cochlodinium Fulvescens (Dinophyceae), a potentially harmful dinoflagellate from California coastal waters. Journal of Phycology, V. 48, pp. 384-393.
• Breier JA, D Gomez-Ibanez, E Reddington, J Huber, D Emerson. 2012. A precision multi-sampler for deep-sea huydrothermal microbial mat studies. Deep-Sea Research I, V. 70, pp. 83-90.
• Emerson D, E Roden, BS Twining. 2012. The microbial ferrous wheel: iron cycling in terrestrial, freshwater, and marine environments. Frontiers in Microbiology, V. 3, pp. 1-2.
• Emerson D. 2012. Biogeochemistry and microbiology of microaerobic Fe (II) oxidation. Biochemical Society Transactins, V. 40, pp. 1211-1216.
• Fields DM, SD Shema, HI Browman, TQ Browne, AB Skiftesvik. 2012. Light primes the escape response of the Calanoid copepod, Calanus finmarchicus. PLoS ONE, V. 7(6): e39594.
• Larsen PF. 2012. The macroinvertebrate fauna of rockweek (Ascophyllum nodosum) dominated low energy rocky shores of the Northern Gulf of Maine. Journal of Coastal Research, V. 28, pp. 36-42.
• Martinez-Garcia M, D Brazil, NJ Poulton, BK Swan, ML Gomez, DED Masland, ME Sieracki, R Stepanauskas. 2012. Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. The ISME Journal, V. 6(3), pp. 703-707.
• Martinez-Garcia M, DA Brazil, BK Swan, C ARnosti, PSG Chain, KG Reitenga, G Xie, NJ Poulton, ML Gomez, DED Masland, B Thompson, WK Bellows, K Ziervogel, C Cho, S Ahmed, CD Gleasner, CJ Detter, R Stepanauskas. 2012. Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PLoS ONE, V. 7(4), pp. 1-11.
• Martinez-Garcia M, BK Swan, NJ Poulton, ML Gomez, DED Masland, ME Sieracki, R Stepanauskas.2012. High throughput single-cell sequencingidentifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. The ISME Journal, V. 6, pp. 113-123.
• Brandsma J, J Martinez Martinez, H Slagter, C Evans, C Brussard. 2012. Microbial biogeography of the North Sea during summer. Biogeochemistry. V. 113 (103), pp. 119-136.
• Martinez Martinez J, DC Schroeder, WH Wilson. 2012. Dynamics and genotypic composition of Emiliania huxleyi and their co-occurring viruses during a coccolithophore bloom in the North sea. FEMS Microbiology and Ecology, V. 81(2), pp. 315-323.
• Matrai PA, C Leck. 2012. A silver lining to Arctic clouds? Global Change, Issue 9, pp. 8-11.
• Herrmann M, R Najjar, A Neeley, M Vila-Costa, JWH Dacey, G DiTullio, DJ Kieber, RP Kiene, PA Matrai, R Simo, M Vernet. 2012. Diagnostic modeling of dimethylsulfide production in coastal water west of the Antarctic Peninsula. Continental Shelf Research, V. 32(1), pp. 96-109.
• Shepson PB, PA Ariya, C Deal, DJ Donaldson, TA Douglas, T Maksym, PA Matrai, L Russell, B Saenz, J Stefels, N Steiner. 2012. OASIS: Bringin scientists together from multiple disciplines to study changes and feedbacks in the polar environments. EOS. Transactions of the American Geophysical Union, V. 93(11), pp. 117-124.
• Roden EE, JM BcBeth, M Blothe, EM Percak-Dennett, EJ Fleming, RR Holyoke, GW Luther, 3rd, D Emerson, J Schieber. 2012. The microbial ferrous wheel in a neutral-pH groundwater seep. Frontiers in Microbiology, V. 3, pp. 172.
• Mumford AC, JL Barringer, WM Benzel, PA Reilly, LY Young. 2012. Microbial transformations of arsenic: mobilization from glauconitic sediments to water. Water Research, V. 46(9), pp. 2859-2868.
• Nuester J, S Vogt, M Newville, AB Kustka, BS Twining. 2012. The unique biogeochemical signature of the marine diazotroph Trichodesmium. Frontiers in Microbiology, V. 3, pp. 1-15.
• Nuester J, S Vogt, BS Twining. 2012. Localization of iron within centric diatoms of the genus Thalassiosira. Journal of Phycology, V. 48(3), pp. 626-634.
• Nigro LM, K Harris, BN Orcutt, A Hyde, S Clayton-Luce, K Becker, A Teske. 2012. Microbial communities at the borehole observatory on the Costa Rica Rift flank. (Ocean Drilling Program Hole 896A) Frontiers in Extreme Microbiology, V. 3, pp. 232.
• Edwards KJ, CG Wheat, BN Orcutt, S Hulme, K Becker, H Jannasch, A Haddad, T Pettigrew, W Rhinehart, K Grigar, W Bach, W Kirkwood, A Klaus. 2012. Design and deployment of borehole observatories and experiments during IODP Expedition 336, Mic-Atlantic Ridge flank at North Pond. In: Edwards, KJ and the expedition 336 Scientists. Proc. IODP, 336: Tokyo (Integrated Ocean Drilling Program Management International, Inc.) doi:10.2204/iodp.proc.336.109.2012.
• Orcutt BN, RA Barco, SB Joye, KJ Edwards. 2012. Summary of carbon nitrogen, and iron leaching characteristics and fluorescence properties of materials considered for subseafloor observatory assembly. In: Edwards KJ and the Expedition 336 Scientists. Proc. IODP, 336: Tokyo (Integrated Ocean Drilling Program Management International, Inc.) doi: 10.2204/iodp.proc.336.108.2012.
• Gao Q, C Leck, C Rauschenberg, PA Matrai. 2012. On the chemical dynamics of extracellular polysaccharides in the high Arctic surface microlayer. Ocean Science, ASCOS Special Issue, V. 8, pp. 401-418.
• Del Campo J, F Not, I Form, R Massana, ME Sieracki. 2012. Taming the smallest predators of the oceans. The ISME Journal, V. 7(2), pp. 351-358.
• Stepanauskas R, 2012. Single cell genomics: an individual look at microbes. Current Opinion in Microbiology, V. 15, pp. 613-620.
• Lin H, BS Twining. 2012. Chemical speciation of iron in Antarctic waters surrounding free-drifting icebergs. Marine Chemistry, V. 128-129, pp. 81-91.
• Bucci V, D Nunez-Milland, BS Twining,FL Hellweger. 2012. Microscale patchiness leads to large and important intraspecific internal nutrient heterogeneity in phytoplankton. Aquatic Ecology, V. 46, pp. 101-118.
• King AL, SA Sanudo-Wilhelmy, PW Boyd, BS Twining, SW Wlhelm, C Breene, MJ Ellwood, DA Hutchins. 2012. A comparison of biogenic iron quotas during a diatom spring bloom using multiple approaches. Biogeosciences, V. 9, pp. 667-687.
• Baines SB, BS Twining, MA Brezezinski, JW Krause, S Vogt, D Assael, H McDaniel. 2012. Significant silicon accumulation by marine picosyanobacteria. Nature Geoscience, V. 5, pp. 886-891.
• Boyd PW, RF Strezepek, S Chiswell, H Change, JM DeBruyn, M Ellwood, K Kennan, AL King, EW Maas, S Nodder, SG Sander, P Sutton, BS Twining, SW Wilhelm, DA Hutchins. 2012. Microbial control of diatom bloom dynamics in the open ocean. Geophysical Research Letters, V.39, doi: 10.1029/2012GL053448.
• Twining BS, SB Baines, S Vogt, DM Nelson, 2012. Role of diatoms in nickel biogeochemistry in the ocean. Global Biogeochemical Cycles, V. 26(4), doi: 10.1029/2011GB004233.
• Vernet M, KL kSmith, AO Cefarelli, JJ Helly, RS Kaufmann, H Lin, DG Long, AE Murray, BH Robinson, HA Ruhl, TJ Shaw, AD Sherman, J S;printall, GR Stephenson, KM Stuart, BS Twining. 2012. Islands of ice: influence of free-drifting Antarctic icebergs on pelagic ecosystems. Oceanography, V. 25(3), pp. 38-39.
• Mazard S, WH Wilson, DJ Scanlan. 2012. Dissecting the physiological response to phosphorus stress in marine Synechococcus isolates (Cyanophyceae). Journal of Phycology, V. 48, pp. 94-105.
• Wilson WH, MJ Allen, A Pagarete. 2012. Coccolithovirus. The Springer Index of Viruses. In: Tidona C, Darai G (Eds), Springer, New HYork, pp. 1253-1257.
• Yang EC, GH Boo, HJ Kim, SM Cho, SM Boo, RA Andersen, HS Yoon. 2012. Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist, V. 163(2), pp. 217-231.
• Price DC, CX Chan, HS Yoon, EC Yang, H Qui, AP Weber, R Schwacke, J Gross, NA Blouin, C Lane, A Reyes-Prieto, DG Durnford, JA Neilsen, BF Lang, G Burger, JM Steiner, W Loffelhardt, JE Meuser, MC Posewitz, S Ball, MC Arias, B Henrissat, PM Coutinho, SA Ronsing, S Symeonidi, H Doddapaneni, BR Green VD Rajah, J Boore, D Bhattacharya. 2012. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science, V. 335(6070), pp. 843-847.
• Debashish B, D Price, HS Yoon, EC Yang, NJ Poulton, RA Andersen. SP Das. 2012. Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Nature: Scientific Reports, V. 2, pp. 356.

2011

• Li WKW, RA Andersen, DJ Gifford, LS Incze, JL Martin, CH Pilskaln, JN Rooney-Varga, ME Sieracki, WHWilson, NH Wolff. 2011. Planktonic microbes in the gulf of Maine area. PLoS One, V. 6(6), e20981.
• Poulton AJ, JR Young, NR Bates, WM Balch, 2011. Bimetry of detached Emiliania huxleyi coccoliths along the Patagonian Shelf. Marine Ecology Progress Series, V. 443, pp. 1-17.
• Balch WM, DT Drapeau, BC Bowler, ES Booth, E Lyczkowski, D Alley. 2011.The contribution of coccolithophores to the optical and inorganic carbon budgets during the Southern Ocean Gas Experiment: new evidence in support of the "Great Calcite Belt" hypothesis. Journal of Geophysical Research-Oceans. Special Issue, V. 116, CooF6,doi:10.1029/2011JCoo6941.
• Balch WM, DT Drapeau, BC Bowler, ES Booth, A Poulton. 2011. Zonal and meridional pattersn of phytoplankton biomass and carbon dixation in the Equatorial Pacific Ocean, between 110 W and 140 W. Deep-Sea Research II, V. 58, pp. 400-416.
• Landry MR, KE Selph, AG Taylor, D Decoma, WM Balch, RRR Bidigare. 2011. Phytoplankton growth, grazing and production balances in the HNLC Equatorial Pacific. Deep-Sea Research II, V. 58, pp. 524-535.
• Brzezinski M, SB Baines, WM Balch, C Beucher, F Chai, RC Dugdale, JW Krause, MR Landry, A Marchi, C Measures, DM Nelson, A Parker, A Poulton, KE Selph, PG Strutton, AG Taylor, BS Twining. 2011. Co-limitation of diatoms by iron and silicic acid in the Equatorial Pacific. Deep-Sea Research II, V. 58, pp. 493-511.
• Garneau ME, A Schnetzer, PD Countway, AC Jones, EL Seubert, DA Caron. 2011. Examination of the seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, by quantitative PCR. Applied & Environmental Microbiology, V. 77(21), pp. 7669-7680.
• Ki DY, PD Countway, RJ Gast, DA Caron. 2011. Rapid shifts in the structure and composition of a protistan assemblage during bottle incubations affect estimates of total protistan specied richness. Microbial Ecology, V. 62, pp. 383-398.
• Schnetzer A, SD Moorthi, PD Countway, IC Gilg, DA Caron. 2011. Depth matters: microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries. Deep-Sea Research I, V. 58, pp. 16-26.
• Steele JA, PD Countway, L Xia, PD vigil, JM Beman, DY Kim, CE Chow, R Sachdeva, AC Jones, MS Schwalbach, JM Rose, I Hewson, A Patel, F Sun DA Caron, JA Fuhrman. 2011. Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME Journal, V. 5, pp. 1414-1425.
• Singer E, D Emerson, EA Webb, RA Barco, JG Duenen, WC Nelson, CS Chan, LR Comolli, S Ferriera, J Johnson, JF Heidelberg, KJ Edwards. 2011. Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) exidizing zetaproteobacterium. PLoS ONE, V. 6(9), e25386.
• Chan CS, SC Fakra, D Emerson, EJ Fleming, KJ Edwards. 2011. Lithotrophic iron-oxidizing bacteria produce organic stalks to control iron mineral growth: implications for biosignature formation. The ISME Journal, V. 5, pp. 717-727.
• Edwards KJ, BGT Glazer, OJ Rouxel, W Bach, D Emerson, RE David, BM Toner, CS Chan, BM Tebo, H Straudigel, CL Moyer. 2011. Ultra-diffuse hudrothermanl venting suipports Fe-oxidizing bacteria and massive umber deposition at 5000m off Hawaii. The ISMEJournal, V. 5, pp. 1748-1758.
• Roden EE, D Emerson. 2011. Rust never sleeps: a new wave for neutral-pH Fe redox cycling. Environmental Microbiology Reports. V. 3, pp. 1-26.
• Browman, HI, J Yen, DM Fields, J-F St. Pierre, AB Skiftesvik. 2011. Fine-scale observations of the predatory behaviour of the carnivorous copepod Paraeuchaeta norvegica and the escape responses of their ichthyoplankton prey, Atlantic cod. Marine Biology, V. 158, pp. 2653-2660.
• Fields DM, CMF Durif, RM Bjelland, SD Shema, AB Skiftesvik, HI Browman. 2011. Grazing rates of Calanus finmarchicus on Thalassiosira weissflogii cultured under different levels of ultraviolet radiation. PLoS One, V. 6(10), e26333.
• Fleming EJ, EA Langdon, M Martinez-Garcia, R Stepanauskas, N Poulton, EDP Masland, D Emerson. 2011. What's new is old: resolving gthe identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One, V. 6(3): e17769.
• Weynberg KD, MJ Allen, IC Gilg, DJ Scanlan, WH Wilson. 2011. Genome sequence of Ostreoccoccus tauri virus OtV-2 throws light on the role of picoeukarote niche separation in the ocean. Journal of Virology, V. 85(9), pp. 4520-4529.
• Martinez Martinez J, NJ Poulton, R Stepanauskas, ME Sieracki, WH Wilson. 2011. Targeted sorting of single virus-infected cells of the coccolithophore Emiliania Huxleyi. PLoS One, V. 6(7): e22520.
• Halfacre JW, PB Shepson, WR Sinpson, TN Knepp, KA Pratt, PA Matrai, JW Bottenheim, DK Perovich, ME Baldwin, JD Fuentes. AGU Fall Meeting Abstracts 12/2011.
• McAllister SM, RE Davis, JM McBeth, BM Tebo, D Emerson, CL Moyer. 2011. Biodiversity and emerging biogeography of the neutrophiliciron-oxidizing Zetaproteobacteria. Applied & Environmental Microbiology. V. 77, pp. 5445-5447.
• McBeth JM, BJ Little, RI Ray, KM Farrar, D Emerson. 2011. Neutrophilic iron-oxidizing "Zetaproteobacteria" and mild steel corrosion in nearshore marine environments. Applied & Environmental Microbiology, V. 77, pp. 1405-1412.
• Lin H, S Rauschenberg, CR Hexel, TJ Shaw, BS Twining. 2011. Free-drifting icebergs as sources of iron to the Weddell Sea. Deep-Sea Research II, V. 58, pp. 1392-1406.
• Shimmield G. 2011. Introduction to the geochemistry of estuaries and coasts. In: Wolanski, E. and McLusky, DS. (eds.) Treatise on Estuarine and Coastal Science, V. 4, pp. 108, Waltham, Academic Press.
• Heywood JL, ME Sieracki, W Bellows, NJ Poulton, R Stepanauskas. 2011. Capturing diversity of marine heterotrophic protists: one cell at a time. The ISME Journal, V. 5(4), pp. 674-684.
• Karsenti E, SG Acinas, P Bork, C Bowler, D DeVargas, J Raes, M Sullivan, D Arendt, F Benzoni, JM Clavene, M Follows, G Gorsky, P Hingamp, D Iudicone, O Jaillon, S Kandels-Lewis, UKrzic, F Not, H Ogata, S Pesant, EG Reynaud C Sardet, ME Sieracki, S Speich, D Velayoudon, J Weissenbach. 2011. A holistic approach to marine ecosystems biology. PLoS Biology, V. 9(10): e1001177.
• Woyke T, A Sczyrba, J Lee, C Rinke, D tighe, S Clingenpeel, R Malmstrom, R Stepanauskas, JF Chen. 2011. Decontamination of MDA reagents for single cell whole genome amplification. PLoS One, V. 6(10): e26161.
• Ghai R, L Pasic, AB Fe3rnandez, AB Martin-Cuadrado, CM Mizuno, KD McMahon, RT Papke, R Stepanauskas, B Rodriguez-Brito, F Rohwer, C Sanchez-Porro, A Ventosa, F Rodriquez-Valera. 2011. New abundant microbial groups in aquatic hypersaline environments. Scientific Reports, V. 1:sre00135.
• Stepanauskas R. 2011. Potential for chemilithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science, V. 333 (6047), pp. 1296-1300.
• Twining BS, SB Baines, Jb Bozard, S Vogt, EA Walker, DM Nelson. 2011. Metal quotas of plankton in the equatorial Pacific Ocean. Deep-Sea Research II, V. 58 (3-4), pp. 325-341.
• Baines SB, SB Twining, S Vogt, WM Balch, NS Fisher, D Nelson. 2011. elemental composition of equatorial Pacific diatoms exposed to additions of silicic acid and iron. Deep-Sea Research II, V. 58(3-4), pp. 512-523.
• Pagarete A, G le Corguille, B Tiware, H Ogata, C de Vargas, WH Wilson, MJ Allen. 2011. Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms. FEMS Microbiology Ecology, V. 78(3), pp. 555-564.
• Rowe JM, MF Febre, D Gobena, WH Wilson, SW Wilhelm. 2011. Application of the major capsid protein as a marker of the phylogenetic diversity of Emiliania huxleyi viruses. FEMS Microbiology Ecology, V. 76(2), pp. 373-380.
• Hurst CJ, WH Wilson. 2011. Coral Viruses. In: Studies in Viral Ecology, V. 2: Animal Host Systems (Ed: Christon J. Hurst), pp. 141-149. John Wiley & Sons, Inc.
• Wilson WH, MJ Allen. 2011. Viruses of Algae (Phycodnaviruses) and Mimivirus. In: Fundamentals of Molecular Virology. Chapter 27. (Ed. Nicholas H. Acheson) John Wiley & Sons, Inc.
• Wilson WH, MJ Allen. 2011. Viruses of Eukaryotic Algae. In: Studies in Viral Ecology, V. 1: Micro bial and Botanical Host Systems (Ed: Christon J. Hurst) pp. 193-207. John Wiley & Sons, Inc.
• Wilson WH, JL Van Etten, DS Schroeder, K Nagasaki, C Brussaard, G Bratbak, C Suttle. 2011. Family: Phycodnaviridae. In: Virus Taxonomy, 9th Report of the ICTV (Ed: AMQ King), pp. 219-232. Elsevier, Inc.
• Boo GH, SC Lindstrom, NC Klochkova, N Yotsukura, EC Yang, HG Kim, JR Waaland, GY Cho, Ka Miller, SM Boo. 2011. Taxonomy and biogeography of Agarum and Thalassiophyllum (Laminariales, Phaeophyceae) based on sequences of nuclear, microchondrial, and plastid marker. Taxon, V. 60(3), pp. 831-840.
• Chan CX, EC Yang, T Banerjee, HS Yoon, PT Martone, JM Estevez, D Bhattacharya. 2011. Red and green algal monophyly and extensive gene sharing found in a rich repertoire of red algal genes. Current Biology, V. 21(4), pp. 328-333.
• Scott J, EC Yang, JA West, A Hyokoyama, HJ Kim, SL de Goer, CJ O'Kelly, E Orlova, SY Kim, JK Park, HS Yoon. 2011. On the genus Rhodella, the emended orders Dixoniellales and Rhodellales with a new order Glaucophaerales (Rhodellophyceae, Rhodophyta) Algae, V. 26(4), pp. 277-288.
• Yang EC, J Scott, JA West, HS Yoon, A Yokoyama, U Karsten, SL de Goer, E Orlova. 2011. Erythrolobus australicus sp. Nov. (Porphyridiophyceae, Rhodophyta): a description based on several approaches. Algae, V. 26(2), pp. 167-180.
• Yoon HS, DC Price, R Stepanauskas, VD Rajah, ME Sieracki, WH Wilson, EC Yang, S Duffy, D Bhattacharya. 2011. Single cell genomics reveals organismal interactions in uncultivated marine protists. Science, V. 332(6030), pp. 714-717.

2010

• Boo SM, HS Kim, W Shin, GH Boo, SM Cho, BY Jo, JH Kim, EC Yang, PA Siver, AP Wolfe, D Bhatacharya, RA Andersen, HS Yoon. 2010. Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Molecular Ecology, V. 19(19), pp. 4328-4338.
• Balch, WM, BC Bowler, DT Drapeau, AJ Poulton, P Holligan. 2010. Biominerals and the vertical flux of particulate organic carbon from the surface ocean. Geochemical Research Letters, V. 37(22), L22605. (November 2010)
• Fabry VJ, WM Balch. 2010. Direct measurements of calcification rates in planktonic organisms. In: Guide to Best Practices for Ocean Acidification Research and Data Reporting. U Riebesell, FJ Fabry, L Hansson, JP Gattuso (Eds.) Luxembourg, Publications Office of the European Union, pp. 201-212.
• Painter SC, AJ Poulton, JT Allen, R Pidcock, WM Balch. 2010. The COPAS 'o8 expedition to the Patagonian Shelf: physical and environmental conditions during the 2008 coccolithophore bloom Continental Shelf Research, V. 30(18), pp. 1907-1923.
• Vaughn JM, WM Balch, JF Novotny, CL Vining, JM Palmer, DM Kneifel, AL Bell. 2010. Isolation of Emiliana huxleyi viruses from the Gulf of Maine. Aquatic Microbial Ecology, V. 58(2), pp. 109-116.
• Countway PD, PD Vigil, A Schnetzer, SD Moorthi, DA Caron, 2010. Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, CA). Limnology and Oceanography, V. 55(6), pp. 2381-2396.
• Vigil P, PD Countway, J Rose, DJ Lonsdale, CJ Gobler, DA Caron. 2010. Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems. Aquatic Microbial Ecology, V. 54(1), pp. 83-100.
• Emerson D.2010. Leptothrix. Encyclopedia of Geobiology. A Kappler(Editor), Springer-Verlag, pp. 535-537.
• Emerson D, EJ Fleming, JM McBeth. 2010. Iron-oxidizing bacteria: an environmental and genomic perspective. Annual Review of Microbiology, V. 64, pp. 561-583.
• Emerson D, CL Moyer. 2010. Microbiology of seamounts: common patterns observed in community structure. Oceanography, V. 23(1), pp. 148-163.
• Abrahamsen MB, Browman HI, Fields DM, Skiftesvik AB . 2010. The three-dimensional prey field of the northern krill, Meganyctiphanes norvegica, and the escape responses of their copepod prey. Marine Biology 157(6):1251-1258.
• Fields DM. 2010. Orientation affects the sensitivity of Acartia tonsa to fluid mechanical signals. Marine Biology, V. 157(3), pp. 505-514.
• Gilg IC, LA Amarall-Zettler, PD Countway, S Moorthi, A Schnetzer, DA Caron. 2010. Phylogenetic affiliations of mesopelagic Acantharia and Acantharian-like environmental 18S r RNA genes off the southern California coast. Protist, V. 161(2), pp. 197-211 Al-Azri AR, Piontkovski SA, Al-Hashmi KA, Goés JI, do Gomes HR (2010) Chlorophyll a as a measure of seasonal coupling between phytoplankton and the monsoon periods in the Gulf of Oman. Aquatic Ecology 44(2):449-461.
• Hind AJ, CD Rauschenberg, JE Johnson, M Yang, PA Matrai. 2010. The use of algorithms to predict surface seawater dimethylsulphide concentrations in the SE Pacific, a region of steep gradients in primary productivity, biomass, and mixed layer depth. Biogeosciences Discussion, V. 7(4), pp. 5305-5345.
• Incze LI, H Xue, N Wolfe, D Xu, C Wilson, R Steneck, R Wahle, P Lawton, N Pettigrew, Y Chen. 2010. Connectivity of lobster (Homarus americanus) populations in the coastal Gulf of Maine: Part II. Coupled biophysical dynamics. Fisheries Oceanography, V. 19(1), pp. 1-20.
• Zhang J, YH Spitz, M Steele, C Ashjian, R Campbell, L Berline, PM Matrai.Modeling the impact of declining sea ice on the Arctic marine planktonic ecosystem. Journal of Geophysical Research: Oceans, V. 115(10):C10015.
• Orellana MV, PA Matrai, M Janer, CD Rauschenberg. 2010. DMSP storage in Phaeocystis (Prymneseophyceae) secretory vesicles. Journal of Phycology, V. 47(1), pp. 112-117.
• Lear G, JM McBeth, C Boothman, DJ Gunning, BL Ellis, RS Lawson, K Morris, IT Burke, ND Bryan, AP Brown, FR Livens, JR Lloyd. 2010. Probing the biogeochemical behavior of technetium using a novel nuclear imaging approach. Environmental Science and Technology, V. 44(1), pp. 156-162.
• McClellan DA, DD Ellison. 2010. Assessing and ikmproving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. International Journal of Bioinformatics Research and Applications. V. 6(2), pp. 120-133.
• Denman K, S Sathyendranath, ME Sieracki, E Vanden Burghe. 2010. Observing ocean ecosystems: needs, capabilities, and gaps. In: Proceedings of the OceanObs '09: Sustained Ocean Observations and Information for Society"Conference. Vol. 1, Venice, Italy, 21-25 September 2009. Hall J. Harrison DE, Stammer D, (Eds), ESA Publication WPP-306.
• Sieracki ME, M Benfield, A Hanson, C Davis, CH Pilskaln, D Checkley, HM Sosik, C Ashjian, P Culverhouse, R Cowen, R Lopes, WM Balch, X Irigoien. 2010. Optical plankton imaging and analysis systems for ocean observation. In: Proceedings of the OceanObs '09: Sustained Ocean Observations and Information for Society Conference. Vol. 2, Venice, Italy, 21-25 September 2009, Hall J, Harrison DE, Stammer D (Eds). ESA Publication WPP-306.
• Swan BK, CJ Ehrhardt, KM Reifel, LI Moreno, DL Valentine. 2010. Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea. Applied and Environmental Microbiology, V. 76(3), pp. 757-768.
• Twining BS, D Nunez-Milland, S Vogt, RS Johnson, PN Sedwick. 2010. Variations in Synechococcus cell quotas of phosphorus, sulfur, manganese, iron, nickel, and zinc within mesoscale eddies in the Sargasso Sea. Limnology and Oceanography, V. 55, pp. 492-506.
• De Jonge MD, Holzner C, Baines SB, Twining BS, Ignatyev K, Diaz J, Howard DL, Legnini D, Miceli A, McNulty I, Jacobsen CJ, Vogt S (2010) Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution. Proceedings of the National Academy of Sciences, USA 107(36):15676-15680 Hill LS, Richardson TL, Profeta LTM, Shaw TJ, Hintz CJ, Twining BS, Lawrenz E, Myrick ML (2010) Construction, figures of merit, and testing of a single-cell fluorescence excitation spectroscopy system. Review of Scientific Instruments 81(1):art no 013103. Krause JW, Brzezinski MA, Landry MR, Baines SB, Nelson DM, Selph KE, Yaylor AG, Twining BS (2010) The impact of biogenic silica detritus and large diatoms on Si cycling in the euphotic zone of the eastern equatorial Pacific. Limnology and Oceanography 55:2608-2622. Núñez-Milland DR, Baines SB, Vogt S, Twining BS (2010) Quantification of phosphorus in single cells using synchrotron X-ray fluorescence. Journal of Synchrotron Radiation 17(4):560-566.
• Allen M, Wilson WH. 2010. survival of the fattest. Planet Earth (Spring) pp. 14-15.
• Fischer MG, MJ Allen, WH Wilson. 2010. Giant virus with a remarkable complement of genes infects marine zooplankton. Proceedings of the National Academy of Sciences, USA, V. 107(45), pp. 19508-19513.
• Kegel JU, M Blaxter, MJ Allen, K Metfies, WH Wilson, K Valentin. 2010. Transcriptional host-virus interaction of Emiliania huxleyi ((Haptophyceae) and EhV-86 deduced from combined analysis of expressed sequence tags and microarrays. European Journal of Phycology, V. 45(1), pp. 1-12. Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida K-I, Bhattacharya D (2010) Differential gene retention in plastids of common recent origin. Molecular Biology and Evolution 27(7):1530-1537.Twining BS, Núñez-Milland D, Vogt S, Johnson RS, Sedwick PN (2010) Variations inSynechococcus cell quotas of phosphorus, sulfur, manganese, iron, nickel, and zinc within mesoscale eddies in the Sargasso Sea. Limnology and Oceanography 55:492-506.
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